Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00047 ATGATGGAGTGGCAGAACCAGCAGCAGCAACAGAACCAAACTGAGCAATTGCAAATGCAAATGCAGGTGGAGCAATTGAGCAACGACGCCGATGGAGTTGGTGGCCTCTACGTCAAGGTGATGACCGATGAGCAAATGGAGCTCCTCAGGCAGCAGATCTCTGTCTATGCTTCCATCTGTGACCAACTTGTCGAGATGCACAAGGCAATCACCGCCCAGCAGGACCTTGCCGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCTTGTGCTGCTGGTCACAAGATAACTGCTAGGCAGCGGTGGACGCCCACACCTGTGCAGCTTCAAATTCTTGAGCGGATTTTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGATACAATATGGTCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGGAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGCACCAAATAATGCAGACTCAGAACCAGAGACCGAAGTCGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCAAGCTTATGAACATTTTGTTCCGAAGTTGAGCAACGTGTATTCTCAGAGATCTGAATTAGGTGCTGAAATTCTTTCCTTTGACACACAAACGAATAAAGGGGAGCCCATGTTTCAATCCTTTGGATCTGGTCATATCAGTCAGATGACCCCAACACAGAATCATAGAAATAATATGTCAAATGAAAAAATGAACGTACCGGACTACTCTCCTTACTCTCCATGTGAAGGATATCACTTGGTTGAGTGA 825 44.97 MMEWQNQQQQQNQTEQLQMQMQVEQLSNDADGVGGLYVKVMTDEQMELLRQQISVYASICDQLVEMHKAITAQQDLAGMRLGNLYCDPIMACAAGHKITARQRWTPTPVQLQILERIFDEGNGTPSKQKIKDITLQLIQYGQISEANVYNWFQNRRARSKRKQANSAPNNADSEPETEVDSPKEKKTKPETFQAYEHFVPKLSNVYSQRSELGAEILSFDTQTNKGEPMFQSFGSGHISQMTPTQNHRNNMSNEKMNVPDYSPYSPCEGYHLVE 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 205924 207820 - CmaCh09G000470.1 Cma09g00047 300052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00047 274 PANTHER - 2 259 - -
Cma09g00047 274 ProSiteProfiles 'Homeobox' domain profile. 97 162 IPR001356 GO:0003677
Cma09g00047 274 MobiDBLite consensus disorder prediction 244 274 - -
Cma09g00047 274 MobiDBLite consensus disorder prediction 159 187 - -
Cma09g00047 274 Gene3D - 103 168 - -
Cma09g00047 274 MobiDBLite consensus disorder prediction 244 259 - -
Cma09g00047 274 SUPERFAMILY Homeodomain-like 100 163 IPR009057 -
Cma09g00047 274 SMART HOX_1 99 166 IPR001356 GO:0003677
Cma09g00047 274 CDD homeodomain 101 163 IPR001356 GO:0003677
Cma09g00047 274 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 259 IPR044559 GO:0003700
Cma09g00047 274 Pfam Homeodomain 101 161 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02023 Cma09g00047 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00150 Cma-Chr6:751766 Cma09g00047 Cma-Chr9:205924 7.77E-92 dispersed
Cma09g00047 Cma-Chr9:205924 Cma16g01272 Cma-Chr16:9689343 1.25E-87 dispersed
Cma01g02023 Cma-Chr1:12923752 Cma09g00047 Cma-Chr9:205924 7.67E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35575 PF00046 Homeodomain 5.60E-18 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00047 - - bhj:120085747 480.33