Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00049 ATGGTTATCTATGCCCATTCCCAGCTCTCAGGGCCCCACCTCCCTGCATTATCATCCCCCCTTCCCTCTTCCCACTCTGTTAGTGAGATTCGACTCCCTCTAATCTCTACCACTTCAAAACACCGCCATCTTCGTGTTGTCTGCTCCAGCAGTGATGGTAGTGGTAGCAAGAAGGGAATCCTCCGGGATCTAAACAAGAGAATCCCCGATAACATTGCCCAGAAACTTCCTCAATCCGCTACTTTCATCCCTTGGTTTCATGCCAATAGAATGCTGAGTTTCTACGCCCCTGGATGGTGTGGAGAAATACGAGACGTTATATTCTCCCACAATGGAAGCGTGACTGTAAGAGGATCTGATGGAGAGGCACACCGTGAATCGACTGGAACAGTATCAGCCACCAATAGCAGTAATGAAGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGGCTCGGATTCGAAATGAAAGGCGGAAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGCTTGCAGTGAAGAAAGGTGCAGCCAACGCGGGCAAAAAAGGAAGTAAGAAGGCAGCGAAAGATCCTAACAAGCCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCGATGTCAGAAGCTGATAAAGCACCTTACGTTGCCAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAGTTATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAGTGTCTGAGGTGAATGATGATGAGGAAGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGACGAGTGA 939 47.82 MVIYAHSQLSGPHLPALSSPLPSSHSVSEIRLPLISTTSKHRHLRVVCSSSDGSGSKKGILRDLNKRIPDNIAQKLPQSATFIPWFHANRMLSFYAPGWCGEIRDVIFSHNGSVTVRGSDGEAHRESTGTVSATNSSNEDPVAAAEEIAFCKACARFGLGFEMKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAAEEDESEKSVSEVNDDEEGDEGSEEEDDDDE 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 211689 214846 - CmaCh09G000490.1 Cma09g00049 300054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00049 312 Coils Coil 254 274 - -
Cma09g00049 312 SUPERFAMILY HMG-box 190 276 IPR036910 -
Cma09g00049 312 Pfam HMG (high mobility group) box 203 272 IPR009071 -
Cma09g00049 312 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 163 310 - -
Cma09g00049 312 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 203 272 IPR009071 -
Cma09g00049 312 SMART hmgende2 202 273 IPR009071 -
Cma09g00049 312 MobiDBLite consensus disorder prediction 164 205 - -
Cma09g00049 312 MobiDBLite consensus disorder prediction 289 312 - -
Cma09g00049 312 CDD HMGB-UBF_HMG-box 203 269 - -
Cma09g00049 312 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 163 310 IPR031061 -
Cma09g00049 312 Gene3D High mobility group box domain 186 288 IPR036910 -
Cma09g00049 312 MobiDBLite consensus disorder prediction 166 180 - -
Cma09g00049 312 MobiDBLite consensus disorder prediction 273 312 - -
Cma09g00049 312 MobiDBLite consensus disorder prediction 117 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00049 - - K25507 csv:101203655 213.772
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g02021 Cma09g00049 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00170 Cma-Chr2:781080 Cma09g00049 Cma-Chr9:211689 6.82E-27 dispersed
Cma03g00352 Cma-Chr3:4197216 Cma09g00049 Cma-Chr9:211689 5.95E-33 dispersed
Cma06g00157 Cma-Chr6:787991 Cma09g00049 Cma-Chr9:211689 1.76E-50 dispersed
Cma07g01051 Cma-Chr7:5583059 Cma09g00049 Cma-Chr9:211689 6.84E-40 dispersed
Cma09g00049 Cma-Chr9:211689 Cma16g01275 Cma-Chr16:9709411 5.41E-43 dispersed
Cma01g02021 Cma-Chr1:12921761 Cma09g00049 Cma-Chr9:211689 6.22E-65 transposed
Cma01g02017 Cma-Chr1:12913183 Cma09g00049 Cma-Chr9:211689 2.03E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g85 . Blo12g00851 . Bda03g00323 Bpe02g00306 Bpe04g00284 Bma04g00290 . . . Cma01g02021 Cma09g00049 Car01g01588 . . Cpe06g00019 . . . . . . . . . . . . . . . Cone4ag2024 Cone7ag1941 Cone17ag1458 . Lsi04g01812 Csa04g02709 . . . . Bda11g00975 . . . . . Sed01g2431 Cmo01g02078 Cmo09g00052 . . . Car09g00041 . . Bhi09g02874 Tan01g5116 Cmetu06g2583 . . Mch11g0052 . Cla11g01828 Cam11g1895 Cec11g1920 Cco11g1929 Clacu11g2059 Cmu11g1864 Cre11g2271 . . Chy07g00398 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004593 1 1 2 0 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 6 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35576 PF00505 HMG_box 2.10E-22 CL0114 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00049 Cma_Chr09 FPKM 173.338791 177.974182 139.2715 142.840256 234.904373 243.672897 239.386459 181.576721 198.082886 178.07576