Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00051 ATGAGCTGGTTTTCTTGCATACGTCCCCGTCGTAAAGACGCCAGCAAGGTCGAAATCGACAACGGGAGTCGGAGGGGGAACTCCTATTCAAATGACATTGGAAAGGGGAAGGAATCACAACCCAGCAATGGAAACAACCGGAAATGTGGGGCTGCCCGAAGCTTCCCATTTCGCGAGTTAGCCATGGCCACGAGAGGCTTCAAGGAAGTTAACTTGATTGGTGAAGGCGGTTTTGGAAGAGTTTACAAAGGACGACTAGGAACAGGCCAGCTCGTTGCAATTAAACAACTCGACCGTAAAGGTCTTCAGGGATATCAGGAATTCATCGTCGAAGTTCTCATGTTAAGTTTATTAGATGATAGTAATCTTGTCACCTTGATTGGTTATTGTACTGATGGAGATCAAAGACTGTTGGTCTACGAGTATATGTCGATGGGAAGCTTGGAAAACCATCTTTTTGGCTTGTCCCCCGAACGACCGCCATTGAGTTGGAACACTCGAATCAAGATTGCTCTTGGTGCAGCCCAGGGGCTTGAGTATCTTCACTGCACAGCCAATCCACCGGTCATCTACCGTGACTTGAAATCTGCAAATATTTTGCTGGATGATGACTTCAATCCAAAGCTCTCAGATTTCGGCCTTGCGAAGTTAGGACCGGTTGGTGACAACACTCATGTTTCCACCAGAGTAATGGGAACACAGGGTTATTGTGCTCCGGAGTATGCCATGAGTGGCAAACTCACCCTTAAGTCTGATATTTATTGCTTTGGTGTAGTTCTGTTGGAGATAATTACAGGTAGGAAAGCTATAGACTCCACCAAGAAACCAGGAGAGCAAAATCTGGTTGTTTGGTCTCGCCCTTTCCTAAAAGACCGGAGGAAGTTCATTCAATTGATCGACCCGCTGCTCGAAGGTCACTACCATCTTCGTTGTGTACATCATGCAATTGCAATTGCTGCAATGTGTCTCCAGGAGCAGCCAACGTTCCGGCCAATTGTCAGTGATATCGTTGTTGCCCTTGAGTACTTGGCTTCTCAGAGTTACGGATCAGAACAACCGAGGGACGAGGTGCCTAGTCCCTCCAAACCATCTCCTCAAAAGGACAGGCGTTCCCCTGTTCAAGCATCGAGACGTGGAAAGAATTCAAGATTCATGTAA 1158 47.06 MSWFSCIRPRRKDASKVEIDNGSRRGNSYSNDIGKGKESQPSNGNNRKCGAARSFPFRELAMATRGFKEVNLIGEGGFGRVYKGRLGTGQLVAIKQLDRKGLQGYQEFIVEVLMLSLLDDSNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFGLSPERPPLSWNTRIKIALGAAQGLEYLHCTANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTQGYCAPEYAMSGKLTLKSDIYCFGVVLLEIITGRKAIDSTKKPGEQNLVVWSRPFLKDRRKFIQLIDPLLEGHYHLRCVHHAIAIAAMCLQEQPTFRPIVSDIVVALEYLASQSYGSEQPRDEVPSPSKPSPQKDRRSPVQASRRGKNSRFM 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 217016 218680 + CmaCh09G000510.1 Cma09g00051 300056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00051 385 Gene3D Transferase(Phosphotransferase) domain 1 143 358 - -
Cma09g00051 385 PANTHER OS07G0668900 PROTEIN 27 374 - -
Cma09g00051 385 MobiDBLite consensus disorder prediction 21 49 - -
Cma09g00051 385 SMART serkin_6 67 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00051 385 Pfam Protein kinase domain 67 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00051 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cma09g00051 385 PANTHER OS07G0668900 PROTEIN 27 374 - -
Cma09g00051 385 Gene3D Phosphorylase Kinase; domain 1 37 142 - -
Cma09g00051 385 ProSiteProfiles Protein kinase domain profile. 67 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00051 385 MobiDBLite consensus disorder prediction 15 49 - -
Cma09g00051 385 CDD STKc_IRAK 73 341 - -
Cma09g00051 385 SUPERFAMILY Protein kinase-like (PK-like) 48 341 IPR011009 -
Cma09g00051 385 MobiDBLite consensus disorder prediction 348 385 - -
Cma09g00051 385 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00975 Cma09g00051 CCT
Cma09g00051 Cma12g00680 CCT
Cma05g00975 Cma09g00051 ECH
Cma09g00051 Cma12g00680 ECH
Cma01g02016 Cma09g00051 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00975 Cma-Chr5:7870534 Cma09g00051 Cma-Chr9:217016 0 dispersed
Cma09g00051 Cma-Chr9:217016 Cma12g00680 Cma-Chr12:3678680 9.52E-174 dispersed
Cma01g02016 Cma-Chr1:12910712 Cma09g00051 Cma-Chr9:217016 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68779 PF00069 Pkinase 5.90E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00051 - - csv:101203407 672.159