Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00051 | ATGAGCTGGTTTTCTTGCATACGTCCCCGTCGTAAAGACGCCAGCAAGGTCGAAATCGACAACGGGAGTCGGAGGGGGAACTCCTATTCAAATGACATTGGAAAGGGGAAGGAATCACAACCCAGCAATGGAAACAACCGGAAATGTGGGGCTGCCCGAAGCTTCCCATTTCGCGAGTTAGCCATGGCCACGAGAGGCTTCAAGGAAGTTAACTTGATTGGTGAAGGCGGTTTTGGAAGAGTTTACAAAGGACGACTAGGAACAGGCCAGCTCGTTGCAATTAAACAACTCGACCGTAAAGGTCTTCAGGGATATCAGGAATTCATCGTCGAAGTTCTCATGTTAAGTTTATTAGATGATAGTAATCTTGTCACCTTGATTGGTTATTGTACTGATGGAGATCAAAGACTGTTGGTCTACGAGTATATGTCGATGGGAAGCTTGGAAAACCATCTTTTTGGCTTGTCCCCCGAACGACCGCCATTGAGTTGGAACACTCGAATCAAGATTGCTCTTGGTGCAGCCCAGGGGCTTGAGTATCTTCACTGCACAGCCAATCCACCGGTCATCTACCGTGACTTGAAATCTGCAAATATTTTGCTGGATGATGACTTCAATCCAAAGCTCTCAGATTTCGGCCTTGCGAAGTTAGGACCGGTTGGTGACAACACTCATGTTTCCACCAGAGTAATGGGAACACAGGGTTATTGTGCTCCGGAGTATGCCATGAGTGGCAAACTCACCCTTAAGTCTGATATTTATTGCTTTGGTGTAGTTCTGTTGGAGATAATTACAGGTAGGAAAGCTATAGACTCCACCAAGAAACCAGGAGAGCAAAATCTGGTTGTTTGGTCTCGCCCTTTCCTAAAAGACCGGAGGAAGTTCATTCAATTGATCGACCCGCTGCTCGAAGGTCACTACCATCTTCGTTGTGTACATCATGCAATTGCAATTGCTGCAATGTGTCTCCAGGAGCAGCCAACGTTCCGGCCAATTGTCAGTGATATCGTTGTTGCCCTTGAGTACTTGGCTTCTCAGAGTTACGGATCAGAACAACCGAGGGACGAGGTGCCTAGTCCCTCCAAACCATCTCCTCAAAAGGACAGGCGTTCCCCTGTTCAAGCATCGAGACGTGGAAAGAATTCAAGATTCATGTAA | 1158 | 47.06 | MSWFSCIRPRRKDASKVEIDNGSRRGNSYSNDIGKGKESQPSNGNNRKCGAARSFPFRELAMATRGFKEVNLIGEGGFGRVYKGRLGTGQLVAIKQLDRKGLQGYQEFIVEVLMLSLLDDSNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFGLSPERPPLSWNTRIKIALGAAQGLEYLHCTANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTQGYCAPEYAMSGKLTLKSDIYCFGVVLLEIITGRKAIDSTKKPGEQNLVVWSRPFLKDRRKFIQLIDPLLEGHYHLRCVHHAIAIAAMCLQEQPTFRPIVSDIVVALEYLASQSYGSEQPRDEVPSPSKPSPQKDRRSPVQASRRGKNSRFM | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 217016 | 218680 | + | CmaCh09G000510.1 | Cma09g00051 | 300056 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00051 | 385 | Gene3D | Transferase(Phosphotransferase) domain 1 | 143 | 358 | - | - | |
Cma09g00051 | 385 | PANTHER | OS07G0668900 PROTEIN | 27 | 374 | - | - | |
Cma09g00051 | 385 | MobiDBLite | consensus disorder prediction | 21 | 49 | - | - | |
Cma09g00051 | 385 | SMART | serkin_6 | 67 | 343 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma09g00051 | 385 | Pfam | Protein kinase domain | 67 | 336 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma09g00051 | 385 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 189 | 201 | IPR008271 | GO:0004672|GO:0006468 | |
Cma09g00051 | 385 | PANTHER | OS07G0668900 PROTEIN | 27 | 374 | - | - | |
Cma09g00051 | 385 | Gene3D | Phosphorylase Kinase; domain 1 | 37 | 142 | - | - | |
Cma09g00051 | 385 | ProSiteProfiles | Protein kinase domain profile. | 67 | 343 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma09g00051 | 385 | MobiDBLite | consensus disorder prediction | 15 | 49 | - | - | |
Cma09g00051 | 385 | CDD | STKc_IRAK | 73 | 341 | - | - | |
Cma09g00051 | 385 | SUPERFAMILY | Protein kinase-like (PK-like) | 48 | 341 | IPR011009 | - | |
Cma09g00051 | 385 | MobiDBLite | consensus disorder prediction | 348 | 385 | - | - | |
Cma09g00051 | 385 | ProSitePatterns | Protein kinases ATP-binding region signature. | 73 | 95 | IPR017441 | GO:0005524 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g00975 | Cma09g00051 | CCT | |
Cma09g00051 | Cma12g00680 | CCT | |
Cma05g00975 | Cma09g00051 | ECH | |
Cma09g00051 | Cma12g00680 | ECH | |
Cma01g02016 | Cma09g00051 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00975 | Cma-Chr5:7870534 | Cma09g00051 | Cma-Chr9:217016 | 0 | dispersed | |
Cma09g00051 | Cma-Chr9:217016 | Cma12g00680 | Cma-Chr12:3678680 | 9.52E-174 | dispersed | |
Cma01g02016 | Cma-Chr1:12910712 | Cma09g00051 | Cma-Chr9:217016 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68779 | PF00069 | Pkinase | 5.90E-43 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00051 | - | - | csv:101203407 | 672.159 |