Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00055 ATGGGCGACTCAGCAGTGCCAATGTTTGTTCAACATACAGAAGCAATGTTGGACGTAATTCACAGAACGGAGAAGTTGGAAATTAAAGATGTAGATGAAGAGCCGGTCATTGATATTGACAGCCTTGATAAGAAGGATCCACTTCGTGTTGTGGAGTACATCGATGACTTGTATACATACTGCAGGGCAGCCGAGGTTTCTGTTTGTGTTCCACCAAATTACATGGCCCAGCAAACACATATTAGCGAGAGGATGAGAAGGTTTCTCATTGACTGGCTAATAATTGAGTTTATGAAGGAACTAACAAAGCAGAACATAATGATTGCTTTAAAGGTACACTACAAATTTAAGCTGATGGAAGAGATACTGTACCTAACAGTCAACCTCGTCGATAGATTCTTAGCCGTTCAGGAGAAGAAGAAGCTCCAGCTAGTTGGAGTGACAGCCATGTTTATAGCCTGCAAGTACAAAGAGATATCTGAGAAGGCCTTCAGAGCAAAAGAAATTCTAAACATGGAGAAGTTGATGTTTAACACCTTACAGTTCAAGCTGTCTGTTCCAACACTTTATGTCTTCATGAGGAGGTTTCTCAAGGCTATTCAATCTCACAGAGAGGCCTTCTTTACTAGCTGGTGCTGCAGTGAACAGCAGTGTTCACTGCTCAATGCACCATCAAGGGCTTCAAAGAATGGAGCAAAACCAGTGAATGACACACCGGGTATTCACAGGAACAGCTTCTGTAAGCATAGACGCACCGGGCTCGTTAACGATCTTACAAAGGATAAGGTGATTTCGAAAGTCACCGGCTACGAAAAATAA 819 42.49 MGDSAVPMFVQHTEAMLDVIHRTEKLEIKDVDEEPVIDIDSLDKKDPLRVVEYIDDLYTYCRAAEVSVCVPPNYMAQQTHISERMRRFLIDWLIIEFMKELTKQNIMIALKVHYKFKLMEEILYLTVNLVDRFLAVQEKKKLQLVGVTAMFIACKYKEISEKAFRAKEILNMEKLMFNTLQFKLSVPTLYVFMRRFLKAIQSHREAFFTSWCCSEQQCSLLNAPSRASKNGAKPVNDTPGIHRNSFCKHRRTGLVNDLTKDKVISKVTGYEK 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 252777 254848 + CmaCh09G000550.1 Cma09g00055 300060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00055 272 PANTHER CYCLIN-B2-3-RELATED 3 205 - -
Cma09g00055 272 Gene3D - 70 185 - -
Cma09g00055 272 SMART cyclin_7 110 178 IPR013763 -
Cma09g00055 272 CDD CYCLIN 85 176 IPR013763 -
Cma09g00055 272 Pfam Cyclin, N-terminal domain 56 185 IPR006671 -
Cma09g00055 272 Gene3D - 56 206 - -
Cma09g00055 272 SUPERFAMILY Cyclin-like 45 184 IPR036915 -
Cma09g00055 272 PANTHER CYCLINS 3 205 IPR039361 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00055 Cma-Chr9:252777 Cma03g00627 Cma-Chr3:5435253 9.35E-51 dispersed
Cma01g02011 Cma-Chr1:12878049 Cma09g00055 Cma-Chr9:252777 2.53E-89 wgd
Cma07g00387 Cma-Chr7:1663930 Cma09g00055 Cma-Chr9:252777 2.46E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00055 K21777 - csv:101223199 262.692