Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00069 ATGGCGGTCTACGGCGGCGACGTTCCCCAAGTGGATCCGAGAAGCGGCTTCTGCAAATCCACGAAAATTTTCCACAGCAAACGCCGCCCAATCCCACTTCCCCCTAACCAATCCCTCGATGCGACGACGTTTATCTCATCCCGCCCCCACAACGGCAAAATCGCCCTCATCGACGCCACCACCGGCCAACACATCACCTATTCCCACCTCTGGGAGTCTGTCGACTCCGTAGCCTCCTCCCTTTCCGACATGGGCATCAGAAAAGGCCACGTCATCCTCCTCCTTTCCCCAAACTCCATTTTCTTCCCCATTATTTGCCTCGCCGTCATGTCCCTCGGCGCCGTCATAACCACCACAAATCCCCTCAACACCCCTCAAGAAATCGCCAAACAGATCGCCGATTCCAACCCCATCTTAGCCTTCACCACCCAACAACTAATCCCCAAAATCGCCAGTTCCAAATTGCCAGTCGTTCTGATCGACGGTGAAATTCAAATTAAAAAATTCTCAGTCAAAATCGTGTCGACGCTGAGCGAAATGATGAGGAAAAAATCCAGTGGAAGTCGAGTTAAGGAGCGTGTGGACCAAAACGACACAGCGACTCTGCTTTACTCCTCTGGAACGACAGGGGCCAGCAAGGGCGTAGTGTCGTCTCACAAGAATCTAATTGCGATGGTTCAAGTCGTTGTGACGAGGTTCAAATTGAGCGAAGGGGAAGGGACTTTTATTTGTACGGTTCCGATGTTCCATATTTACGGCCTTGTGGCTTTCGCTACGGGGCTGCTCTCTTCGGGATCGACAATCGTCGTGTTGTCGAAATTCGAGATTCATGAAATGTTGTCGGCGATTGAGAAGTACAGAGCCACGTATCTGCCTCTTGTGCCGCCGATACTGGTGGCGATGGTGAACGCTGCCGAGCAGATAAAGGGAAAGTACGATTTGGGGTCGTTACACACGGCGTTGTCCGGCGGAGCGCCGCTCGGGAAGGAGGTGATTGAGGGTTTCGTTGAGAAGTATCCAAATGTTTCCATTCTTCAGGGATATGGATTGACGGAGTCCACAGGAATTGGGGCGTCCACCGATTCTCTGGAGGAGAGCCGCCGGTACGGCACGGCGGGGCTTCTATCGCCGAGCACCGAGGCCAAGATTGTTGTCCCGGACACCGGCGAGGCTCTGCCTGTGAACACAACCGGAGAGCTCTGGCTCAGAGGGCCCACCATCATGAAAGGGTATTTTGGTAATGTGGAGGCCACCACCTCAACGCTTGATTCTGAGGGATGGCTGAGAACCGGCGATCTATGTTACATTGATGAAGATGGTTTTATTTTTGTGGTGGATCGGCTTAAAGAACTCATCAAATATAAGGGCTATCAGGTGCCTCCGGCAGAATTAGAGGCATTATTGCTCACTCATCCCAGTATCTCCGATGCCGCTGTAATTCCATATCCAGACAAAGAGGTTGGCCAGTATCCAATGGCTTACGTGGTGAGAAAGGGTGGAAGTGACATTTCACATGAAGATATAATGCAACTCGTGGCAAGACAGGTGGCACCGTACAAGAGAATCCGGCGGGTTGCGTTCGTGGATTCCATTCCCAAGAACCCCTCCGAGCCCGCCGAGAAAAAGCAATTTACCGCAAATCGCACCGTTTTGGCGCTCTTCTTCTCTCAGTTCCCGGGTCCACTTTCCCTTTTCCGATATTTAGAGATAGGCCACTTGCCGTCGGGAAGGTCTAGATCTTTCTGGAAGCCACCTTCATATAGCACCTCCGCTGTTCTGCCCCGCCCCTTCGTCTCCTTCGGAAAATTTCTGTCCTGTGATTGGATTGAATCGAGCTCCGACTACAGAAGATTTCGCCGGTGGTGTATTGTGATTCTCGTCGACATTCATTTCCGTCGCTGCCGGTTCTTTTTTCCGTTGCTTGTACTATTTTTTCGTCTGAAGAGGTACGTTTTTCGTTGTAGCTTCCGGAATCCCTTGGTGGATTATGTATTTCCGTTTATTGAATTCAGTTTCGTCGGGATCGTCGAGTTTTCCTTTCGTTGTCTGGATGATTCTTTCCGTCGTAATTGGATCTCCACCTTCTTCTGCCTTCTGTGTTTCCCTCTGCAGCTGAATAGAATGGCGGACCATTCAAATGAAGGATCTAGCACCAGCAGTATTTCCGGGGAGACTGCGACTTCGATTATTGAGCTGAAAATCAAGACTTTAGATTCACATATCTACAGTTTTCAAGTGAATAAAGATATGCCGGTTCAATTATTCAAGGAGAAAATCGCCAATGAAATAGGAATCCCAGTGAATCAGCAACGTTTGATATTCAGGGGAAAGGTTTTAAAGGATGAACATTCTCTTTCTGAGTATTATTTGGAAAATGGACATACATTGCATTTAGTTGAAAGGCAACCAACACAGCAACATGCAGCATCAGATACTAGCTCTGGCGAAAGACCTGCAAATGTACCTTCTTCAACCAGTAACGAAGCTGGAGTTGGTGCCCCTCGAAATCGACAAATTGCACATAGTGTTGTTTTAGGAACATTTAATGTTGGGGATCAAGGTGAAGGCATTGTTCCTGATCTTTCTCGGGTTATTGGGGCCGTTCTGAATTCTATTGGACTAAGCAGCCAAAATGCAAACATCCCACCTGGTATGCAGTCTACGTTGCCTAACAATCGTGGCACAGCAAGTCAAGGAAATGAAACATTTAGAGCAAACAATGAGGCTGGAGGACAGGCAACGAGTCAAGCTCAAACTGGACAGGCATTTCCCAGCCAGCCATCACAAAGCTTTCCTCACGTGATTCAAATTCCACTTGCCAGTGCAGCCGTATCAGTTCCTTCCATTCATGTGCCCATTCCTGATGCTATGACAACACTTTCCGAGTTCATGAACCGTATGGAGCTTGCAATATCTCAGAATGGTGGAGATCTAACCAGGGTGGCACTGCCTACCAATCCACAAGGTTTACCAACCACTGAATCGTTGAGCATTGTCTTGCGTCATGCTCAACGGCTTCTAAGTGATTATGCCATATCTTCACTATCCCGTATTGCGGAGCGTTTGGAGCAAGATAGCTCTTCCACTGATCCCATTGTGAGGGGTCAAATTCAGGAAGAGTCGGTACAAGTAGGACTTAGGATGCAACAATTTGGTGCACTTCTTTTGGAACTGGGCCGTACCATCTTGACACTCCGTATGGGACAATCATCTGCTGAGTCGGTTGTTAACACTGGCCCAGCAGTGTATATCTCTCCTACGGGGCCAAATCCCTTGATGGTTCAGCCTTTCCCCCTTCAAACTAACCCCCTCCTTGGTGGTGCTGTACTACCATCAAACCCAGTTGTTGGTGCAGTAGGTATTGGAACTGCCCCTAGACACATCAACATTCACATACATGCTGGTGAGGATGATAGTGTTTTGATGCTGTGTTATTTTCATGTAATGCAATGTGCTTTCCTAAGTTCTGCCACTCTTTCTGCAGTTGGTACCAGGTCAAATAATGGGGAGGGAGCACCTGCAGATCGTCAGAATGTGGTCAATGGATCCACGGATTCAGGTGTAGCCCAGGCACCTCCTGTTGTCAACATTCCACATCCGCTGGGTGTTTCGATTTCTGCTGCTGTGCAACCTGGTGAAGATCAAGTGCGAACGGCAGTTCAGAATTCTTCTATTGGTTCTGGACAAGGGAGTGAACAGCAAAGTGATACTAAAAGGGACATGGGTGGAGAGTCGAGCGAGTCATTACCTGGGCGTGATTCGGAAACTGGAAATGACAAGATCGTCACAGACAATATTTATCGAGATACAGGAAGGTCTAGAAGCACACCTGATTTACCAACATGCTCTGGTAGTATGGGCTCTGAATTTGTTGGAAGAAATGAAGAAAATTTTCAGAGTCAGGCATCTTGTGAGAAGAGCACGGGAACTGGGTCTTCTCAAGCTGTTCCACTTGGACTTGGACTGGGGTGTTTGGAACGACCGAGGAGAGGCAAGCAGCAAAGTTCACAGGCTAAAGGGGGTAGCAGTGGAACCAGCCACAGCCAGGGTCATGCAGGCCAGCAGTTTTTACAATCTCTTGCCTCTAGTGCTTCTATGAATAGGTCAAATGCTTATGATCCCTCAAGCCTACAACAGACCGCTAGCCCAACTGTTCATAGCAGATCCTTGCATGGGCCAGGTTCTAACAGCCAAATTGATCTAGGAAGCAGCATGTCTCAAGTTTTGCAGAGTCCTGCTTTAAATGGACTATTGACAGGGCTTTCAGAGCAAACTGGCGCTGGTTCTCCTGATGTCTTGAGGAATATGTTGCAACAGATCACGCAAAGCCCTCAAATGAGAAATACAGTCAATCAAATTGCCCAGCAGGTTGACCCTCAAGATCTTGAGCAAATGTTTGCTGGGTCGGGAAGAGGCCAAGGCGGTGGTATCGATTTGTCAAGGATGTTCCAACAGATGATGCCTATTGTCTCTCAAGTGCTTGGAGGATCGCCAAGGCAACCATCTTCCTCAAACATGCAACGATCGCCAAGGCAACCACCTCTGTCAAACCTGGAAAGCGAGCAAATGCCTCATAGTGAGAGGTCTGGTAGTGGAGTGGAAACATCTAATGGCCAAAATTCTCAGATTGATGCCCAAGATCTTGCTCGAAGGATCATATCTACCAATTCGCCAAGGGACGTCTTCCGTGCTGTCGTTGAGAGTTCAGCTCGACTTTCTGGCAGTAGTAGTGAGGATATTGCAAATGAGTTGTGCAGCGATGAGACACTTGCTAAGGAATATGTGGAGATGTTATCAAGTGATGTAAACCGACGGTTACAAGGCAATTCAGACCAGGAAAAATAA 4845 48.4 MAVYGGDVPQVDPRSGFCKSTKIFHSKRRPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQHITYSHLWESVDSVASSLSDMGIRKGHVILLLSPNSIFFPIICLAVMSLGAVITTTNPLNTPQEIAKQIADSNPILAFTTQQLIPKIASSKLPVVLIDGEIQIKKFSVKIVSTLSEMMRKKSSGSRVKERVDQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFKLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIEKYRATYLPLVPPILVAMVNAAEQIKGKYDLGSLHTALSGGAPLGKEVIEGFVEKYPNVSILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEAKIVVPDTGEALPVNTTGELWLRGPTIMKGYFGNVEATTSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPSISDAAVIPYPDKEVGQYPMAYVVRKGGSDISHEDIMQLVARQVAPYKRIRRVAFVDSIPKNPSEPAEKKQFTANRTVLALFFSQFPGPLSLFRYLEIGHLPSGRSRSFWKPPSYSTSAVLPRPFVSFGKFLSCDWIESSSDYRRFRRWCIVILVDIHFRRCRFFFPLLVLFFRLKRYVFRCSFRNPLVDYVFPFIEFSFVGIVEFSFRCLDDSFRRNWISTFFCLLCFPLQLNRMADHSNEGSSTSSISGETATSIIELKIKTLDSHIYSFQVNKDMPVQLFKEKIANEIGIPVNQQRLIFRGKVLKDEHSLSEYYLENGHTLHLVERQPTQQHAASDTSSGERPANVPSSTSNEAGVGAPRNRQIAHSVVLGTFNVGDQGEGIVPDLSRVIGAVLNSIGLSSQNANIPPGMQSTLPNNRGTASQGNETFRANNEAGGQATSQAQTGQAFPSQPSQSFPHVIQIPLASAAVSVPSIHVPIPDAMTTLSEFMNRMELAISQNGGDLTRVALPTNPQGLPTTESLSIVLRHAQRLLSDYAISSLSRIAERLEQDSSSTDPIVRGQIQEESVQVGLRMQQFGALLLELGRTILTLRMGQSSAESVVNTGPAVYISPTGPNPLMVQPFPLQTNPLLGGAVLPSNPVVGAVGIGTAPRHINIHIHAGEDDSVLMLCYFHVMQCAFLSSATLSAVGTRSNNGEGAPADRQNVVNGSTDSGVAQAPPVVNIPHPLGVSISAAVQPGEDQVRTAVQNSSIGSGQGSEQQSDTKRDMGGESSESLPGRDSETGNDKIVTDNIYRDTGRSRSTPDLPTCSGSMGSEFVGRNEENFQSQASCEKSTGTGSSQAVPLGLGLGCLERPRRGKQQSSQAKGGSSGTSHSQGHAGQQFLQSLASSASMNRSNAYDPSSLQQTASPTVHSRSLHGPGSNSQIDLGSSMSQVLQSPALNGLLTGLSEQTGAGSPDVLRNMLQQITQSPQMRNTVNQIAQQVDPQDLEQMFAGSGRGQGGGIDLSRMFQQMMPIVSQVLGGSPRQPSSSNMQRSPRQPPLSNLESEQMPHSERSGSGVETSNGQNSQIDAQDLARRIISTNSPRDVFRAVVESSARLSGSSSEDIANELCSDETLAKEYVEMLSSDVNRRLQGNSDQEK 1614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 298453 311820 + CmaCh09G000690.1 Cma09g00069 300074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00069 1614 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Cma09g00069 1614 CDD 4CL 33 536 - -
Cma09g00069 1614 Pfam AMP-binding enzyme C-terminal domain 463 536 IPR025110 -
Cma09g00069 1614 Gene3D - 720 815 - -
Cma09g00069 1614 PRINTS Ubiquitin signature 761 781 IPR019956 -
Cma09g00069 1614 PRINTS Ubiquitin signature 782 803 IPR019956 -
Cma09g00069 1614 Gene3D - 450 549 IPR045851 -
Cma09g00069 1614 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 710 1613 - -
Cma09g00069 1614 MobiDBLite consensus disorder prediction 1493 1542 - -
Cma09g00069 1614 MobiDBLite consensus disorder prediction 892 929 - -
Cma09g00069 1614 MobiDBLite consensus disorder prediction 1215 1401 - -
Cma09g00069 1614 Pfam Ubiquitin family 732 802 IPR000626 GO:0005515
Cma09g00069 1614 PANTHER OS07G0498800 PROTEIN 710 1613 - -
Cma09g00069 1614 SUPERFAMILY Ubiquitin-like 727 803 IPR029071 -
Cma09g00069 1614 ProSiteProfiles Ubiquitin domain profile. 730 805 IPR000626 GO:0005515
Cma09g00069 1614 SUPERFAMILY Acetyl-CoA synthetase-like 45 536 - -
Cma09g00069 1614 MobiDBLite consensus disorder prediction 1163 1195 - -
Cma09g00069 1614 Pfam AMP-binding enzyme 50 454 IPR000873 -
Cma09g00069 1614 SMART ubq_7 730 801 IPR000626 GO:0005515
Cma09g00069 1614 MobiDBLite consensus disorder prediction 1163 1190 - -
Cma09g00069 1614 MobiDBLite consensus disorder prediction 802 832 - -
Cma09g00069 1614 MobiDBLite consensus disorder prediction 1260 1315 - -
Cma09g00069 1614 MobiDBLite consensus disorder prediction 1330 1401 - -
Cma09g00069 1614 Gene3D - 21 449 IPR042099 -
Cma09g00069 1614 MobiDBLite consensus disorder prediction 802 835 - -
Cma09g00069 1614 MobiDBLite consensus disorder prediction 1215 1236 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02002 Cma09g00069 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01999 Cma-Chr1:12837561 Cma09g00069 Cma-Chr9:298453 0 dispersed
Cma05g01242 Cma-Chr5:9530020 Cma09g00069 Cma-Chr9:298453 7.10E-63 dispersed
Cma09g00069 Cma-Chr9:298453 Cma18g00222 Cma-Chr18:1201248 8.51E-151 dispersed
Cma09g00069 Cma-Chr9:298453 Cma09g00070 Cma-Chr9:312643 6.28E-24 tandem
Cma01g00515 Cma-Chr1:2648430 Cma09g00069 Cma-Chr9:298453 5.61E-138 transposed
Cma01g02000 Cma-Chr1:12846028 Cma09g00069 Cma-Chr9:298453 3.79E-19 transposed
Cma01g02002 Cma-Chr1:12847571 Cma09g00069 Cma-Chr9:298453 0 transposed
Cma02g01464 Cma-Chr2:8398833 Cma09g00069 Cma-Chr9:298453 3.90E-50 transposed
Cma03g01449 Cma-Chr3:9077395 Cma09g00069 Cma-Chr9:298453 3.60E-25 transposed
Cma04g01396 Cma-Chr4:7127905 Cma09g00069 Cma-Chr9:298453 5.06E-139 transposed
Cma08g00710 Cma-Chr8:4323953 Cma09g00069 Cma-Chr9:298453 3.34E-36 transposed
Cma14g00225 Cma-Chr14:991400 Cma09g00069 Cma-Chr9:298453 5.54E-133 transposed
Cma15g01097 Cma-Chr15:6987825 Cma09g00069 Cma-Chr9:298453 1.32E-54 transposed
Cma17g00072 Cma-Chr17:343297 Cma09g00069 Cma-Chr9:298453 1.26E-18 transposed
Cma19g00204 Cma-Chr19:1351565 Cma09g00069 Cma-Chr9:298453 2.15E-128 transposed
Cma01g01998 Cma-Chr1:12835665 Cma09g00069 Cma-Chr9:298453 2.66E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00069 K10526 - csv:101216180 1376.3