Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00072 ATGCTTCCTCTAACTTCCCCCTGCTTTGCACTCTGTGCATTCCTCTTCTTCTTCTCCCCCACCGTCTCCGCTGAAAATCCCTACCGCTTCTTCACCTGGAATGTCTCCTACGGCAACATTTACCCTCTCGGCCTTCGCCAGCAGGGAATACTCATCAATGGCCAATTCCCTGGCCCCGACATCCACTGCGTCACCAATGACAACCTCATCATCAATGTCTTCAACAGCTTGGACGAGCCCTTCCTCATTTCCTGGAACGGAATTCAACAGAGAAGAAACTCATACGAAGACGGTGTTTATGGAACAACGTGCCCAATCCCTCCAGGGAAGAACTTCACGTACATTCTGCAAGTGAAGGATCAGATCGGCAGCTTTTACTATTTCCCCTCTTTGGCCTTCCACAAGGCCGCCGGCGGTTTCGGCGGCATCAGAATCCTCAGCCGCCCCCGGATCCCGGTCCCCTTCCCCGATCCCGACGGCGACTACACTGTCCTCATCGGCGACTGGTACAAGTCCAATCACACGACCCTGAAGGCTCATCTGGATCGTGGTAAGAAGCTTCCATTTCCGAATGGAATCCTCATCAATGGCCGTGGCAATGATACCTCTTTTAGCGTTGAACAAGGAAAAACATACAGGCTGAGAATTTCAAATGTGGGGCTGGAGCATTCCCTCAACTTCCGAATTCAAGGTCATAAAATGAAGCTTGTAGAGGTGGAGGGAACACATACCCTTCAAACGACCTACTCGTCGCTCGATGTTCATGTTGGTCAGTCTTACTCTGTGCTCGTCACGGCTGATCAGCCAGCTCAGGACTACTACATTGTCGTCTCCACTCGCTTCACTTATCGAGTACTCTCCACCACTGGCATTCTCCATTACAGTAACTCTGCTGGCCCTGTCAAAGGCCCCCCTCCCGGTGGTCCAACAATACAGATCGACTGGTCCCTCAACCAAGCCCGGTCTATTAGAACCAATCTTACAGCCAGTGGACCAAGGCCAAACCCACAAGGATCTTATCACTATGGTCTCATAAACACGACCAAAACCATCATACTTGCAAGTTCTGCTGGTCAAGTCAACCGCAAACAAAGGTATGCAGTTAACAGCGTATCCTTCAACCCTGCTGACACTCCCCTGAAACTTGCGGACTTCTTCAAAATTGGTGGGGTTTTTCGTGTCGGAAGCATCTCCGATAGGCCCACCGGTGGAGGAATCTACCTCGACACATCCGTGATGGGTGCAGACTATAGATCATTTGTAGAAATTGTGTTTCAAAACAATGAGAACATTGTCCAAAGTTGGCATATTGATGGCTACTCTTTCTTTGTGGTCGGCATGGATGGAGGCCAATGGACACAGTCTAGCAGAAATCAATACAATCTCCGAGATGCAATCGCTCGTTGCACAATTCAGGTCTACCCTTTTTCGTGGACTGCAATTTACGTTGCCCTCGATAATGTAGGAATGTGGAACGTGAGGTCGGAGTTTTGGGCAAGACAGTATCTCGGACAACAATTCTACCTCCGCGTCTATACGCCATCGACTTCACTCAGGGATGAGTTTCCCATTCCAAAGAATGCTCTTCTGTGTGGCAGGGCAAGCGAACTGAAATGGTTAAGGCAATACGACGACGTTTTGCAATGTCTCAGGACTCTGGATTGGAAACACGATTTTCACCCTGTCCACGTGTACGGAAATCGAAGTGATCCAACGATCAAGAATGCGGAACAGGAAGCGTGGTCGGCGGACAAGTCTCTGCAGAGGATTGCTTTCTGGAGTTCTTCTATGGCCAACGAACAGGACGAAGTGGCTGCTGATCTTGAGGCCACACTTCTTACTTCCGCCGCTCAACAAGCCATTTCTCCGAATGATGAACTGCACGTTCTTAACGATGCCGTCCCGCAGATGCCTTCTTACGTGACGAAAGACCTGTCGTCGATTGGAGTATGCATACCCTGCATCATTCGGCTATCTGGCATTGAAAGGCACCATTATTCCTTCTCACTGTCGGTACCAATCGTAGGTTCTGACAAGAAGGCAATTGATGATGATATTGATAGAAACATTTGCTGCCTATGTTTAGGTATTTTGCAGTTCAGTTATATTGATGACAAAGGTAACTTCGTAAAATGTAAGGGAGTTGATGATTTAGCTGTCTCGATTTCCGAGATGGTAAAGAAAGAAGGCCATCAGATTGATAGTTTTTCTCTTGAGGTGTCAATTCCTTCGATCATTCTGGAGAATGAGAAGCTTGTTTGGCTGTATTTGAAAAGAAAATATGGGTCTGAACACTGGTTCCAGGGCAAGCCTCCTCCTATATCTCTTTCAGCGAAAGATGCATTAAAAATATGTATAACAAAGCCTCTTGAAACTTTACTGGATTGCAAATCTAGTTCAAGTGGACTGCGCATTCGGTTAACTTATAGTCATCCTAAAGCTTCAAACAGCAATGGTAGTTCCAACAAAAGACACCAGGACAGCTGCAAGATGAGAAAAATTGGCAACTCAGAAACTATTGTTGATTCTATTGCAGCTGGCAATGATGAAACCTTGGATATTTCCAAGTTTAGTGCCAATTCTGTCGCTGATAATTGTTTCAATCCTTCACAAGAAGTTGAACTTTCTAGGTGCTTTGAATTTCCTCAAGAAAAGATCAATGAACCATGCCATTTGGCTCTAATTTGTTATAGGACTTCAATCTACTTGATTGGCAGATACATTAAGTATTCAAGAAATGTGAGTCAAACACGGTGGGTAATTGGTGATGAGAGAATGGGAGAGGCATCTGTCGAGGAGATTCTAGGCAACAATATTCTTCCCCTCTGTCGGGGTGATAGTTACAAGTTCCATGCTGCTGGTAGAGAGGATCTCGATGTTCGGATGTTGGGTTCAGGTAGACCTTTCCTGGTTGAGATACAGAATGCCCGTCTTCTCCCATCTGAGATGATTGTAAATGAAATTGAGTCGAAGATAAATGGCTCAAAAAATAAATTGATTGGCGTAAGAAATCTGAAAGTTGTAGGCAGCGAGGGTTGGGCCTTCGTGCAAGAAGGAGAAGCAGAGAAGCAGAAGCAATATGCTGCACTTGTGTGGACGTCTCGCCCACTTGAGGATGATGATTTGTTGTCAATATCATCACTCAAAGACCTGAAAATTTTGCAGAGAACTCCAATAAGAGTGCTTCATCGCCGTAGTCCATTAGAACGTGAAAAGATCATCCACTGGATGAGGATTGAGAAGGTAGCTGAAAGTTCTCAGTATTATCTCCTGCATTTGTGTACCCAGGCTGGAACGTACATTAAAGAATTTGTCCATGGGGATCTTGGTCGCACGCATCCCAGTATGGGATCTATTCTTAGTTGCAGAGCAGAGATTCTTCAACTTGACGTTACGGATATAAAAATGGACGGCCATCTCGCTGAATAA 3429 46.11 MLPLTSPCFALCAFLFFFSPTVSAENPYRFFTWNVSYGNIYPLGLRQQGILINGQFPGPDIHCVTNDNLIINVFNSLDEPFLISWNGIQQRRNSYEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPDGDYTVLIGDWYKSNHTTLKAHLDRGKKLPFPNGILINGRGNDTSFSVEQGKTYRLRISNVGLEHSLNFRIQGHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPAQDYYIVVSTRFTYRVLSTTGILHYSNSAGPVKGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINTTKTIILASSAGQVNRKQRYAVNSVSFNPADTPLKLADFFKIGGVFRVGSISDRPTGGGIYLDTSVMGADYRSFVEIVFQNNENIVQSWHIDGYSFFVVGMDGGQWTQSSRNQYNLRDAIARCTIQVYPFSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYTPSTSLRDEFPIPKNALLCGRASELKWLRQYDDVLQCLRTLDWKHDFHPVHVYGNRSDPTIKNAEQEAWSADKSLQRIAFWSSSMANEQDEVAADLEATLLTSAAQQAISPNDELHVLNDAVPQMPSYVTKDLSSIGVCIPCIIRLSGIERHHYSFSLSVPIVGSDKKAIDDDIDRNICCLCLGILQFSYIDDKGNFVKCKGVDDLAVSISEMVKKEGHQIDSFSLEVSIPSIILENEKLVWLYLKRKYGSEHWFQGKPPPISLSAKDALKICITKPLETLLDCKSSSSGLRIRLTYSHPKASNSNGSSNKRHQDSCKMRKIGNSETIVDSIAAGNDETLDISKFSANSVADNCFNPSQEVELSRCFEFPQEKINEPCHLALICYRTSIYLIGRYIKYSRNVSQTRWVIGDERMGEASVEEILGNNILPLCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIVNEIESKINGSKNKLIGVRNLKVVGSEGWAFVQEGEAEKQKQYAALVWTSRPLEDDDLLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWMRIEKVAESSQYYLLHLCTQAGTYIKEFVHGDLGRTHPSMGSILSCRAEILQLDVTDIKMDGHLAE 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 317328 329077 + CmaCh09G000720.1 Cma09g00072 300077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00072 1142 SUPERFAMILY Pseudouridine synthase 1021 1135 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cma09g00072 1142 SUPERFAMILY Cupredoxins 22 175 IPR008972 -
Cma09g00072 1142 Gene3D - 343 540 IPR008972 -
Cma09g00072 1142 Gene3D - 158 333 IPR008972 -
Cma09g00072 1142 Gene3D - 900 1024 - -
Cma09g00072 1142 PANTHER MULTI-COPPER OXIDASE-LIKE PROTEIN 22 536 - -
Cma09g00072 1142 Pfam Multicopper oxidase 391 514 IPR011706 GO:0005507|GO:0016491
Cma09g00072 1142 PANTHER MULTI-COPPER OXIDASE 22 536 IPR045087 -
Cma09g00072 1142 SUPERFAMILY Cupredoxins 344 533 IPR008972 -
Cma09g00072 1142 Gene3D - 28 149 IPR008972 -
Cma09g00072 1142 SUPERFAMILY Cupredoxins 155 334 IPR008972 -
Cma09g00072 1142 Pfam Multicopper oxidase 35 148 IPR011707 GO:0005507
Cma09g00072 1142 Gene3D - 1025 1135 - -
Cma09g00072 1142 CDD CuRO_3_AAO_like_1 375 496 IPR034275 GO:0005507
Cma09g00072 1142 Pfam Multicopper oxidase 161 296 IPR001117 -
Cma09g00072 1142 CDD CuRO_1_AAO_like_1 30 145 IPR034273 GO:0005507
Cma09g00072 1142 CDD CuRO_2_AAO_like_1 160 294 IPR034271 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00072 - - - csv:101215694 1041.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00335 Cma09g00072 CCT
Cma01g01997 Cma09g00072 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01997 Cma-Chr1:12832004 Cma09g00072 Cma-Chr9:317328 0 dispersed
Cma07g00724 Cma-Chr7:3192710 Cma09g00072 Cma-Chr9:317328 0 dispersed
Cma09g00072 Cma-Chr9:317328 Cma19g00768 Cma-Chr19:7566596 0 dispersed
Cma01g01995 Cma-Chr1:12820590 Cma09g00072 Cma-Chr9:317328 4.15E-30 wgd
Cma05g00335 Cma-Chr5:1455822 Cma09g00072 Cma-Chr9:317328 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g137 Blo01g01619 . . . Bpe02g00325 . . Bma01g02394 Cmo05g00336 . Cma01g01997 Cma09g00072 Car01g01569 . . . . Bhi04g00090 . . . Hepe10g0675 . . Cla08g01388 Cam08g1861 Cec08g1440 Cco08g1572 Clacu08g1555 . Cre08g1339 . Cone7ag1919 Cone17ag1436 Cone20ag0046 Lsi04g01790 Csa04g02681 . Cme03g01548 Blo17g00723 Blo18g00757 Bda08g01183 . . Bpe05g00167 Bma01g00712 . Sed03g1664 Cmo01g02058 Cmo09g00073 . Cma05g00335 Car05g00279 . . . Bhi09g02935 Tan01g5072 . . Hepe01g2318 Mch11g0074 . Cla05g01582 Cam05g1690 Cec05g1693 Cco05g1740 Clacu05g1679 Cmu05g1570 Cre05g1687 Lsi08g01278 . Chy07g00372 Cme07g00076
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008871 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 2 3 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00072 Cma_Chr09 FPKM 28.560629 32.620152 5.608332 6.030558 30.66329 31.579964 29.205107 8.088011 7.914257 9.404019