Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00079 ATGTCACCGCCGGCGAGGACCAAAAGCGGGAATGGCGGCGTAGATAAGCAGTATCCTCCGCCGCTTGCCACCCACGATGAAGTTGTTTCTGACCCCATTGTTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTCTATATTCAGAGGTTACAAGAAGGGGCGGGCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAAGTGTGTTCAAGTTCTCTCCTACAACCACCAGTGCTTCCTTTGTATTGAGAAAACATTATCTCAGTCTTCTCTACCACTACGAGCAAGTTTACTTGTTCCGCCGCCAGGGCCCCATCTACGCCCCTCAAGCGCCATTTTCTTTCGGTAGCCCTACCAGCGAAAACGAATTGGCTCTGGTGGAATATACCCCCAAAACAACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGTCACTGGAACAATTGATGGGAAATTCGATTGTGGCTACCTGGTGTCTGTGAAATTGGGATCTGAGGTTCTGAGGGGAGTTCTTTACCATCCAGAGGAGCCTACCCCGTCGGATCTCCGGCCCCAACCTACCAACGCCATTGTACCGTACACTGGTACCAGACATCGACACTCTGGTCGGCGGCACCGGAGGAGCCGGAGAAAGGGAGACCCCAACCACCCCAAACCAAACAGAAGTGGGTATAATTTCTTTTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCTAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAACCTCAGCCCTGAAGAAAGGATGGTTTACCAAAACATTGGGCTGAAAGACAAGGAGAGGTACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCTGGCAAGTGATGATGTTCATGCAGCTAACTATTCAAAACAGGGAGAGTAG 978 48.98 MSPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFRRQGPIYAPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVSVKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGTRHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRLASDDVHAANYSKQGE 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 350994 353367 + CmaCh09G000790.1 Cma09g00079 300084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00079 325 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Cma09g00079 325 SUPERFAMILY ARID-like 25 128 IPR036431 GO:0003677
Cma09g00079 325 CDD HMGB-UBF_HMG-box 238 302 - -
Cma09g00079 325 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Cma09g00079 325 SMART hmgende2 237 306 IPR009071 -
Cma09g00079 325 SUPERFAMILY HMG-box 235 308 IPR036910 -
Cma09g00079 325 Gene3D High mobility group box domain 222 316 IPR036910 -
Cma09g00079 325 Gene3D - 25 127 IPR036431 GO:0003677
Cma09g00079 325 SMART bright_3 30 121 IPR001606 GO:0003677
Cma09g00079 325 MobiDBLite consensus disorder prediction 1 23 - -
Cma09g00079 325 Coils Coil 294 314 - -
Cma09g00079 325 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 316 - -
Cma09g00079 325 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Cma09g00079 325 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Cma09g00079 325 SMART ARID_2 26 116 - -
Cma09g00079 325 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 316 - -
Cma09g00079 325 MobiDBLite consensus disorder prediction 196 244 - -
Cma09g00079 325 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Cma09g00079 325 MobiDBLite consensus disorder prediction 218 235 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01993 Cma09g00079 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00079 Cma-Chr9:350994 Cma14g00602 Cma-Chr14:2991873 6.15E-07 dispersed
Cma08g01025 Cma-Chr8:6405677 Cma09g00079 Cma-Chr9:350994 7.66E-88 transposed
Cma17g00095 Cma-Chr17:465702 Cma09g00079 Cma-Chr9:350994 3.65E-90 transposed
Cma01g01993 Cma-Chr1:12805284 Cma09g00079 Cma-Chr9:350994 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35578 PF01388 ARID 3.00E-18 CL0123 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00079 - - cpep:111797158 627.476