Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00088 ATGAAGGATGGAAATCGAGCTCTGACGAACGGCGGCTCTTACGGATCTTCCAGATTCTCCTCTCTTTTGGCTTCTGGAGATCGTGACTATCTCGTCTCCTCCACCGGAGCTCAGGTCAAAGTGTCGAATCTCGACGGTAAGGTCCTGGGCCTTTACTTCTCTGCCAACTGGTACCCGCCATGCCGGAGCTTCAACAAGATTCTGGTCCGAACTTACGAGGAGCTCCAAGGAAATGGGTCGAATTTTGAAGTGGTTTATGTGTCCTCCGACGAGGATTCCGACGCCTTCAATGAGTACTGTGCGAGTATGCCGTGGCCGGCGATTCCATTCTCCGACTTGGAAACCAAAATTGCTTTGAACAGGAAATTCGAGATTGAAGGCATTCCGTGTCTGATTATATTGCAGCCGCGTGAAAATAAAGATGAAACGGCGACGTTGCATGAAGGAGTGGAGGTTGTTTACCGATATGGGGTCGATGCATTTCCCTTTACGAAGGAGAGATTGGAGCAGCTGAAGGATGAGGATAGAGAAAAGGAAGAGAATCAGACATTATCTACTTTGCTGACAAATGGCAACAGAGATTATCTTTTGAGTTATCCTATCCCGAAACAGGTCCCTGTTGTTTCATTAGTAGGCAAGACCGTGGGGCTCTACTTCTCAGCGAAATGGTGTCTTCCCGGTATGTTCACGCCCAAGCTGATTGCTATCTACGACCAGATAAAGCAAATGGTAGCAACGAAAGAAAATGAAGATTTCGAGATTGTTTTTGTGTCGAGTGATCGAGATGAGGACTCCTTCAATTCTTACTTCGGTTCGATGCCGTGGCTAGCATTGCCATTTGGAGACCCAATGATTAAAAACCTTGCCAAACATTTTGACGTGCAAGGCATCCCTTGTTTGATAATCTTAGGTCCAAATGGCAAGACAGTCACCAAACAAGGTAGAAACCTAATAAACTTGTACAGGGAAAATGCTTATCCATTCACCGAAGCTAAATTGGAGGAGCTGGTGAAAGAAAAGGAGGAAGAGGCGAAAAAACTCCCGACGTCGGTGCGCCATGTTGGACATAGACACGAGCTGAATTTGGTGTCTGAAGGAAATGGGGGAGGACCGTTCATATGCTGCGAGTGTGACGAGCAGGGTTGTGGATGGGCTTATCAGTGCCTGGATTGTGGATTCGAGGTGCATACAAAGTGCGTCGAGACGAGCAACCATGACTCTCCCTTCAATGGGAGATTAAATTGCTTTGTTATTTTAGCTCTTTATTTCCTTTTCAACTTCCTAATTTTTATGGACAATCTGCAGCTTGAAAACAATTTGATATGTAAATTATTTTAG 1338 45.67 MKDGNRALTNGGSYGSSRFSSLLASGDRDYLVSSTGAQVKVSNLDGKVLGLYFSANWYPPCRSFNKILVRTYEELQGNGSNFEVVYVSSDEDSDAFNEYCASMPWPAIPFSDLETKIALNRKFEIEGIPCLIILQPRENKDETATLHEGVEVVYRYGVDAFPFTKERLEQLKDEDREKEENQTLSTLLTNGNRDYLLSYPIPKQVPVVSLVGKTVGLYFSAKWCLPGMFTPKLIAIYDQIKQMVATKENEDFEIVFVSSDRDEDSFNSYFGSMPWLALPFGDPMIKNLAKHFDVQGIPCLIILGPNGKTVTKQGRNLINLYRENAYPFTEAKLEELVKEKEEEAKKLPTSVRHVGHRHELNLVSEGNGGGPFICCECDEQGCGWAYQCLDCGFEVHTKCVETSNHDSPFNGRLNCFVILALYFLFNFLIFMDNLQLENNLICKLF 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 374715 379188 - CmaCh09G000880.1 Cma09g00088 300093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00088 445 Pfam Thioredoxin-like 46 137 IPR012336 -
Cma09g00088 445 Pfam Thioredoxin-like 212 308 IPR012336 -
Cma09g00088 445 PANTHER THIOREDOXIN 17 399 - -
Cma09g00088 445 SUPERFAMILY Thioredoxin-like 31 136 IPR036249 -
Cma09g00088 445 ProSiteProfiles Thioredoxin domain profile. 173 338 IPR013766 -
Cma09g00088 445 Gene3D Glutaredoxin 24 165 - -
Cma09g00088 445 Gene3D Glutaredoxin 197 329 - -
Cma09g00088 445 Pfam C1 domain 356 400 IPR004146 -
Cma09g00088 445 SUPERFAMILY Thioredoxin-like 203 312 IPR036249 -
Cma09g00088 445 SUPERFAMILY Cysteine-rich domain 345 401 IPR046349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00088 K17609 NXN; nucleoredoxin [EC:1.8.1.8] - csv:101212204 736.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00088 Cma-Chr9:374715 Cma16g01033 Cma-Chr16:7939197 4.36E-75 dispersed
Cma09g00088 Cma-Chr9:374715 Cma01g00873 Cma-Chr1:4921668 5.39E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g172 . Blo12g00875 . . . Bpe04g00258 Bma04g00259 . . . . Cma09g00088 . . . Cpe06g00051 . . . . . . . . . . . . . . . . . . . Lsi04g01774 . Chy04g00395 . . . . . . . . . . . Cmo09g00086 . . . Car09g00076 . . . . . . . . . Cla05g01601 Cam05g1712 Cec05g1712 Cco05g1769 Clacu05g1699 Cmu05g1588 Cre05g1707 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012145 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00088 Cma_Chr09 FPKM 2.352299 1.963646 336.898468 346.219604 10.048987 9.282844 9.326392 47.705215 49.272552 46.648769