Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00093 ATGCAGAACGGAGATTACGGTACAGCTCCGTATTTCCAATACCAAAATTTTCAAAACCTTACCCTTAATCCTAGCCCTAATCCAGTTCCCATTACCCCCGATCGCAACCAGAGCGCTTACGCCTCGGCGCCGCCCTTCTCCACCAATTATGGTGCCTCCGATTACCCTGGCTATGCCCCTTATTATCCCCCCTATTCCCAGAATCCCGATCCCCTCCCTGTCTCTCCGACTGCGCCTCTTTTCAACTCTCCCTCATCCAATTCTAGTCCCCAGACATTCAATCCCACTCCTCAATCACCCGCTTTCCCTCCATTTGAGTCTCAGGTGCCTTATCAGTCGCAATCGTATCACTCAACCTACGATCAGCATCAGACGGCTCCCAATTGTGCTCCCCCTCCACCTTCCTCAATTCCCATGAATCAGAGCTCTAATTCTACCCCTACTGCTAATTCTCCGTTCTCATCCATGTATTCGGCTCCCTTTGGCTCTTTGGCACCCCCGTCGTATGAAAATCCATATGAAAGTTCGGTTAAATTTGATCAGGGAGGCGGATATGCTGATGATAGATATGGAGGTTACGGTCGAAGTCGGTCTGATTTTGGTTCGGAGTTGTACGGAAAGCGGCCGGAGGACGCGGCACCGCGCTTCGACTCTGGCTATGATGACGGTTATGGCGATGGAGTCTATGCTTACCAAGGTGGCAAAGTTGAGCCTTATGGAGCTCGTGGTACGGCTTCTAAGTCTTCGACCTGGTCTGCGGCGACGCCTGCTTTTGACGATTATGGGAGGCCGATAAATATTCCTCCGAAAAAAGATCCGCCGGCGAGTTCACTGAAAGTAGTTAGGGCGATCCCTAAGGTGGAAGCTCAAGAAGACGTCAAAAATTGGGTGCAGAAGTTCCGGGTGAAGCTCTTGGCTGAAAGTGGAGGTCAGAGCACCATGGATGTACTTTGTCAGGTTGGTCTAGATGGCATTCGTATGCTTGATCCAAATTCTAGTCGAACGTTAAGGATATATCCTCTTGAGACCATCACTAGATGTGAAGTGTATGATTCTTCTACCCTGGCTTTCTGGTCCAAGAGCTCTGTGGATATTGAGCCACGGCGTATTAGATTACAGTCAAACAAGTACACCACCAACACGCTGCTGGACACGGTGACTGCTGCAACTGTACAGTTTAAGGAAATGGGTGGAAGAAGTAGGCCTTCTGAATCTTTTAAGGCGCCTGAGCAGCCTACAGAGAAGAAGAAAGGGTTGGTTGATTGGGTGAACCTGATAAAGCCAGGCAACGAGGAGAAAGATCATTGGGTACCTGATGAAGCAGTCACGAAGTGTACAGCCTGTGGGTCAGACTTTGGGGCTTTTGTCCGAAGGCATCACTGCAGAAATTGTGGAGACATCTTCTGTGATAAATGTACGCAAGGTAGAACAGCTCTGACTGCTGAGGAGAATGCTCCTCAAGTTCGAGTTTGTGACAGATGCATGGCGGAAGTGACTCAGAGGCTCGCTAATGCCAAGGATCTGACTAGTAATCCTGTAGGGTTACATAGCCATGAGGATCTTGCCAAAAAACTTAAGGATGAAATGGAGAGAAACCGTAGGTCATCAGGATCCAAGTCTGATGGATCTGGGAAACGTATGAAGGAAGTTGCATGTCCTACTTGTACTGTGCATTTACAGGTGCAGGTTCCAAGCTCAGGTTCCGAGACCATTGAGTGTGGGGTTTGCCAGCATCCATTCCTTGTCAGCGCTCACTGA 1758 49.26 MQNGDYGTAPYFQYQNFQNLTLNPSPNPVPITPDRNQSAYASAPPFSTNYGASDYPGYAPYYPPYSQNPDPLPVSPTAPLFNSPSSNSSPQTFNPTPQSPAFPPFESQVPYQSQSYHSTYDQHQTAPNCAPPPPSSIPMNQSSNSTPTANSPFSSMYSAPFGSLAPPSYENPYESSVKFDQGGGYADDRYGGYGRSRSDFGSELYGKRPEDAAPRFDSGYDDGYGDGVYAYQGGKVEPYGARGTASKSSTWSAATPAFDDYGRPINIPPKKDPPASSLKVVRAIPKVEAQEDVKNWVQKFRVKLLAESGGQSTMDVLCQVGLDGIRMLDPNSSRTLRIYPLETITRCEVYDSSTLAFWSKSSVDIEPRRIRLQSNKYTTNTLLDTVTAATVQFKEMGGRSRPSESFKAPEQPTEKKKGLVDWVNLIKPGNEEKDHWVPDEAVTKCTACGSDFGAFVRRHHCRNCGDIFCDKCTQGRTALTAEENAPQVRVCDRCMAEVTQRLANAKDLTSNPVGLHSHEDLAKKLKDEMERNRRSSGSKSDGSGKRMKEVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 403869 408274 - CmaCh09G000930.1 Cma09g00093 300098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00093 585 Pfam FYVE zinc finger 435 499 IPR000306 GO:0046872
Cma09g00093 585 PANTHER PROTEIN FREE1 1 585 - -
Cma09g00093 585 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 439 499 IPR017455 -
Cma09g00093 585 SMART fyve_4 431 500 IPR000306 GO:0046872
Cma09g00093 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 426 504 IPR013083 -
Cma09g00093 585 MobiDBLite consensus disorder prediction 79 95 - -
Cma09g00093 585 MobiDBLite consensus disorder prediction 172 191 - -
Cma09g00093 585 MobiDBLite consensus disorder prediction 525 546 - -
Cma09g00093 585 CDD FYVE_EEA1 436 498 - -
Cma09g00093 585 MobiDBLite consensus disorder prediction 62 78 - -
Cma09g00093 585 MobiDBLite consensus disorder prediction 18 152 - -
Cma09g00093 585 SUPERFAMILY FYVE/PHD zinc finger 434 510 IPR011011 -
Cma09g00093 585 MobiDBLite consensus disorder prediction 32 49 - -
Cma09g00093 585 PANTHER PROTEIN FREE1 1 585 IPR045893 GO:0036258|GO:0043130
Cma09g00093 585 Coils Coil 515 535 - -
Cma09g00093 585 MobiDBLite consensus disorder prediction 105 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00093 - - - csv:101213650 1011.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01984 Cma09g00093 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00510 Cma-Chr3:4957789 Cma09g00093 Cma-Chr9:403869 1.23E-10 dispersed
Cma09g00093 Cma-Chr9:403869 Cma17g00650 Cma-Chr17:5488026 4.86E-11 dispersed
Cma01g01984 Cma-Chr1:12762108 Cma09g00093 Cma-Chr9:403869 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1153 . Blo12g00878 Bda01g00473 . Bpe02g00338 Bpe04g00253 Bma04g00253 Bma01g02381 . . Cma01g01984 Cma09g00093 Car01g01555 . . Cpe06g00055 . . . . . . . . . . . . . . . . . . . Lsi04g01762 Csa03g04294 Chy04g00402 . . . . . . . . . Sed01g2478 Cmo01g02042 . . . . Car09g00080 . Cpe02g00061 Bhi09g02071 Tan01g5041 Cmetu04g2661 . Hepe01g1602 Mch11g0101 . . . . . . . . . . . Cme04g00455
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005990 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00093 Cma_Chr09 FPKM 37.582226 37.490494 41.941608 46.303829 26.230564 23.019299 24.570248 64.371422 62.553547 59.634991