Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00096 ATGTTTCGGATTTCTTTATTCTTCACCTGTTTCCATTTTACCGCCACCGCCTATTACAGCTTCCAGTTTTTGCTTAATTTGACGCCATATTATTCCCCATCTTCCCTCTTCACCGTCTTTCATCGAAGAACAAGAAACGCAGTGGGGATGAGGAAAAAAGCGCTCCATTCTGTTCTTTCCCACTTGTTTATCCTCGTTTTTCTTATGTTCTCTGCCAGTTTTTGTTTCGCCAATCGCGATATGGAAGCGCTGTTGAAGATGAAGAGCGCCATGATCGGACCCGGGAGGTCGGCGCTTGATGATTGGGAGCCGTCGTCATCCCCGTCTGCTCATTGCGATTTCTCTGGCGTTACGTGTGACGGCGATCACAGAGTTGTTGCGCTTAACGTCTCGAATTTTCGTTTATTCGGCCCGATTCCGCCAGAGATTGGGATGTTGGAGAAGATTGAGAACTTGACCTTAGTGAGTGACAATCTCACCGGAGGACTTCCTCTCGAAATGGCAAAACTCACATCGCTTAAGATTCTTAACCTATCTAACAACGCATTTCATGATAAGTTGCCGGCTGAAATCACGCTCGGAATGACCGAACTCGAGGTTTTTGATGTCTATAACAACAATTTCTCCGGCCCGCTCCCGGTGGAGTTTGTCAAACTGAAGAAGCTTAAGCATCTTGACCTTGGTGGATGTTACTTCACTGGTCAGATTCCTTCTGTTTACTCGGAGATGCAGACGTTGGAGTTCTTAAGCGTGCGGGGAAATGCACTTACCGGAAGTATTCCAGCGAGTTTGGCGCGGCTGAAGAATCTTAGGTATCTTTACGCCGGATATTTTAACCATTACGACGGCGGGATTCCGGCCGAGTTCGGATCGTTGAGTTCTCTTGAGCTTCTCGATTTAGCCAACTGTAACCTCTCCGGTGAAATTCCTCCGAGTTTGGGGAATTTGAAGCACCTGCATAGTCTATTTCTACAAGTAAACAATATAACCGGTCGGATTCCCCCTGAACTTTCCGGTCTGATTAGCCTCAAGTCACTGGACCTCTCACTGAACGAACTCACCGGAGAGATACCGTCGAGTTTCGCGGTACTGCAGAACCTCACGCTGATCAATTTGTTCAACAACAAGCTTCACGGTCCAATCCCTGGTTTCATAGGTGATTTTCCACATCTTGAAGTGCTTCAGTTGTGGAGTAACAACTTCACGCTGGAGCTCCCCGAGAATCTAGGGCGTAACGGAAAACTGTTTCTGCTCGACGTGGCGACAAATCATCTAACTGGACTCATTCCTCCGGATTTATGTAATGGTAGGTTGAAGACTTTGATTCTGTTGGATAATTACTTCTATGGGCCCATCCCTGAGAAATTAGGCCGATGTGATTCACTTACGAAAATAAGAATTGCGGGAAATTTCTTCAACGGAACGGTTCCGGCAGGGTTCTTCAACTTCCCGGCGTTGGAGCTACTTGATATCAGTAATAATTACTTCTCTGGCGCTCTTCCGTCGCAAATGTCTGGCGAGTTTCTTGGAACTCTGCAGCTTAGTAACAACCATATTACCGGGGAAATCCCGGCCGCTATTAAGAATTTAGAAAACTTGCAGATTGTTTCTCTGGAATATAACCAATTCACTGGGCATTTGCCCTTGGAAATATTTGAATTGAACAAGTTGCTGAGGATTAACATCAGCTTTAACGATATTAGCGGCGAAATTCCGCATTCTGTTGTTCAGTGCTCGTCTTTAACGTCAATCGATCTCAGTGAGAATCATCTCGTCGGCCAAATTCCCAGGGGATTGTCGAAGCTGAAAATCTTGAGCGTCCTCAATTTGTCAAGAAATCAAGTGTCGGGCCAAATTCCTGACGAGATTCGGTCGATGATGAGTCTTACAGTTCTTGATTTGTCATACAATAACTTCTTCGGTAGAATCCCCACAGGCGGTCAGTTTTCGGTATTCTACGGCAGCGCCTTCGCCGGAAACCCTAACCTCTGCTTCCCCAGCCACGGATCTTGCGGATCTCTACACAAGAATTCGAAATCTGTTAAGCTAATCATTTCAATCGTCGCGATATTCACCGTTCTATTATGCGTATTCGTCGCAGTTTATCTCAGAAAGAGAAAGAGGATTCAGAAATCAAAGGCATGGAAACTCACAGCGTTCCAACGCCTCAATTTTAAAGCGGAGGACGTCCTCGAGTGTTTGAAGGAGGAGAATATCATCGGCAAAGGCGGCGCTGGCGTCGTCTACCGTGGATCAATGCCAGACGGCTCCATCGTAGCTATTAAACTGTTGTTAGGAAGCGGCCGGAACGACCACGGTTTCTCTGCTGAAATTCAGACTCTAGGGCGAATCAAGCACCGGAACATCGTCAGGCTTTTGGGTTACGTGTCGAACAGAGACACGAATCTGCTTCTATACGAGTACATGCCGAATGGGAGCTTGGATCAGAGGCTGCATGGAGTGAAGGGCGGGCATTTGCATTGGGACTTGCGGTACAAGATCGCGATGGAAGCCGCCAAGGGGCTCTGTTACTTGCACCACGATTGTACGCCGCTGATCATCCACAGGGACGTGAAGTCCAATAATATACTGCTGGATAAGCTCTTTGAAGCTCATGTCTCTGACTTTGGGCTCGCCAAGTTCTTCCAGAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCATACGGCTACATTGCTCCAGAATATGCCTACACACTGAGAGTGGACGAGAAGAGCGATGTGTACAGCTTCGGTGTGGTGCTGCTGGAGCTGATAGCCGGGAGGAAGCCAGTGGGGGATTTTGGAGAAGGCGTGGACATAGTGAGGTGGGTCCTCAAAACCTCATCAGAACTCTCTCAACCGTCCGATGCTGCCTCAGTATTAGCCGTGGTGGACTCGCGCCTCGCCGAATACCCTCTCCAAGACGTAATCCACCTCTTCAAAACAGCCATGATGTGCGTGGAAGAAGACAGCTCTGCAAGGCCAACCATGAGGGAGGTTGTTCACATGCTCTCAAATCCCCCAAGGTCTGCCCCTGCTCTCATCAACCTCTAA 3063 48.16 MFRISLFFTCFHFTATAYYSFQFLLNLTPYYSPSSLFTVFHRRTRNAVGMRKKALHSVLSHLFILVFLMFSASFCFANRDMEALLKMKSAMIGPGRSALDDWEPSSSPSAHCDFSGVTCDGDHRVVALNVSNFRLFGPIPPEIGMLEKIENLTLVSDNLTGGLPLEMAKLTSLKILNLSNNAFHDKLPAEITLGMTELEVFDVYNNNFSGPLPVEFVKLKKLKHLDLGGCYFTGQIPSVYSEMQTLEFLSVRGNALTGSIPASLARLKNLRYLYAGYFNHYDGGIPAEFGSLSSLELLDLANCNLSGEIPPSLGNLKHLHSLFLQVNNITGRIPPELSGLISLKSLDLSLNELTGEIPSSFAVLQNLTLINLFNNKLHGPIPGFIGDFPHLEVLQLWSNNFTLELPENLGRNGKLFLLDVATNHLTGLIPPDLCNGRLKTLILLDNYFYGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALELLDISNNYFSGALPSQMSGEFLGTLQLSNNHITGEIPAAIKNLENLQIVSLEYNQFTGHLPLEIFELNKLLRINISFNDISGEIPHSVVQCSSLTSIDLSENHLVGQIPRGLSKLKILSVLNLSRNQVSGQIPDEIRSMMSLTVLDLSYNNFFGRIPTGGQFSVFYGSAFAGNPNLCFPSHGSCGSLHKNSKSVKLIISIVAIFTVLLCVFVAVYLRKRKRIQKSKAWKLTAFQRLNFKAEDVLECLKEENIIGKGGAGVVYRGSMPDGSIVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQRLHGVKGGHLHWDLRYKIAMEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKLFEAHVSDFGLAKFFQNGGASECMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVLKTSSELSQPSDAASVLAVVDSRLAEYPLQDVIHLFKTAMMCVEEDSSARPTMREVVHMLSNPPRSAPALINL 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 426714 430213 + CmaCh09G000960.1 Cma09g00096 300101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00096 1020 Gene3D Ribonuclease Inhibitor 437 672 IPR032675 -
Cma09g00096 1020 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 60 1014 - -
Cma09g00096 1020 PANTHER UNNAMED PRODUCT 60 1014 - -
Cma09g00096 1020 SUPERFAMILY Protein kinase-like (PK-like) 725 1007 IPR011009 -
Cma09g00096 1020 Gene3D Phosphorylase Kinase; domain 1 698 808 - -
Cma09g00096 1020 ProSiteProfiles Protein kinase domain profile. 734 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00096 1020 Pfam Leucine Rich repeat 342 356 IPR001611 GO:0005515
Cma09g00096 1020 Pfam Leucine rich repeat N-terminal domain 77 120 IPR013210 -
Cma09g00096 1020 SMART LRR_typ_2 340 363 IPR003591 -
Cma09g00096 1020 SMART LRR_typ_2 292 316 IPR003591 -
Cma09g00096 1020 SMART LRR_typ_2 530 554 IPR003591 -
Cma09g00096 1020 SMART LRR_typ_2 170 194 IPR003591 -
Cma09g00096 1020 SMART LRR_typ_2 602 626 IPR003591 -
Cma09g00096 1020 SMART LRR_typ_2 388 412 IPR003591 -
Cma09g00096 1020 SMART serkin_6 734 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00096 1020 Pfam Protein kinase domain 735 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00096 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 853 865 IPR008271 GO:0004672|GO:0006468
Cma09g00096 1020 Gene3D Ribonuclease Inhibitor 194 279 IPR032675 -
Cma09g00096 1020 Gene3D Ribonuclease Inhibitor 280 436 IPR032675 -
Cma09g00096 1020 Pfam Leucine rich repeat 172 230 IPR001611 GO:0005515
Cma09g00096 1020 Pfam Leucine rich repeat 580 639 IPR001611 GO:0005515
Cma09g00096 1020 SUPERFAMILY L domain-like 119 433 - -
Cma09g00096 1020 Pfam Leucine Rich Repeat 294 316 IPR001611 GO:0005515
Cma09g00096 1020 Gene3D Ribonuclease Inhibitor 79 193 IPR032675 -
Cma09g00096 1020 Gene3D Transferase(Phosphotransferase) domain 1 809 1014 - -
Cma09g00096 1020 SUPERFAMILY L domain-like 437 667 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01981 Cma09g00096 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00096 Cma-Chr9:426714 Cma16g00736 Cma-Chr16:3881525 0 dispersed
Cma01g01981 Cma-Chr1:12745016 Cma09g00096 Cma-Chr9:426714 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68782 PF00069 Pkinase 1.80E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00096 K00924 - csv:101221360 1727.99