Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00099 ATGGGTCATATGGTTCGGGCTCTCCGGCACTGGCCGATGTTGCAGAATCACTGTTTCGGTTGCACCGTACATCATTTTCTCTCATCCCCGCCATGGGTCGCCAAAAGAATCGACTCTCTTCGACTAACTTTAGCTACCGTTCATTCTGCTCGTCGCGAAGTCCAACACGGATCGAAAGGTCTCAGATTATCCAAAGCTCAAGCTCCGGCCGAATTCCAAGAAGATGAGAGCGTTGATGAGGACTTGGATGTTAGAAAGAGCCGGAACCAGCTTAAACGGGAAGCTCGACGAGCCGTCCAATGGGGCATGGATCTCGCGGCCTTCTCCACTCCTCAAATTAAACGCATCCTTAGAGTGGCGTCCCTCGAGAAAGATGTCTTCGATGCAATAATGCTTGTGAAGAGGCTTGGGCGTGATGTCAGAGAAGGAAAACGAAGGCAGTTTAGTTACATTGGAAAACTGCTGAGGGATGTTCAACCTGAATTAATGGACAGTTTAATACAGGCCACAAAAGACGGTGACCATAGCACGCTGCAGACATTGTCTGGTTCGGTAGCAGTTGACGATGATGAAGATACAGACTCTGAATATGAGGAGGAGGAAGAAGAGGGTCCGCATGTGGACATTGCTACAAGATGGCTTGATGGGTTAGTCAGTAAGGACAAGAACGTTACAAATGAAATTTATTCGCTACAAACTGTGGAATTTGACCGTCAGGAGCTGCGGAGACTTGTCCGAAAAGTGCACATGGTTGAAGAACGCAAGGCGGCAACTGAAGAGAACGAGGATGAAGTCAATGTGGCAATAACAACCGCTAAGAAGCCCCTTGCTCGTTTTCTTTGTAGAATGGCGAAACAACTGCCCCCTTATGAACTCTAG 879 48.24 MGHMVRALRHWPMLQNHCFGCTVHHFLSSPPWVAKRIDSLRLTLATVHSARREVQHGSKGLRLSKAQAPAEFQEDESVDEDLDVRKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRVASLEKDVFDAIMLVKRLGRDVREGKRRQFSYIGKLLRDVQPELMDSLIQATKDGDHSTLQTLSGSVAVDDDEDTDSEYEEEEEEGPHVDIATRWLDGLVSKDKNVTNEIYSLQTVEFDRQELRRLVRKVHMVEERKAATEENEDEVNVAITTAKKPLARFLCRMAKQLPPYEL 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 440576 443672 - CmaCh09G000990.1 Cma09g00099 300104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00099 292 Coils Coil 241 261 - -
Cma09g00099 292 Gene3D - 96 174 IPR023153 -
Cma09g00099 292 PANTHER OSJNBB0026I12.6 PROTEIN 1 288 - -
Cma09g00099 292 SUPERFAMILY PSPTO4464-like 97 257 IPR023153 -
Cma09g00099 292 Pfam Protein of unknown function (DUF615) 85 268 IPR006839 -
Cma09g00099 292 CDD YjgA-like 85 257 IPR006839 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00099 - - - csv:101214378 428.713
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1128 . . . . . . . Bma01g02373 . . . Cma09g00099 . . . Cpe06g00062 . . . . . . . . . . . . . . . Cone4ag1977 Cone7ag1895 . . Lsi04g01753 Csa03g04287 Chy04g00410 . . . . . . . . . Sed01g2480 . Cmo09g00096 . . . Car09g00087 . . Bhi09g02078 Tan01g5032 Cmetu04g0766 . . . . Cla05g01864 Cam05g1993 Cec05g2005 Cco05g2063 Clacu05g1985 Cmu05g1866 Cre05g1990 . . . Cme04g00461
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010806 0 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00099 Cma_Chr09 FPKM 7.760473 7.932793 7.320386 6.751707 41.585186 40.251373 35.974953 9.433494 8.894026 7.733058