Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00101 ATGGCCGGAGAATATAGGTTTGCAATGGACCAGAAGGACATTGTGAGATTATTGGTTGCCACCATTGGTGATTTCACTCGATGTCGCTTGATCAATAAAGAGCACAGGAACCTTCACAAAGAGCAATGTGCCGAGAGATTGGCAGCTGAAGACGGAAGCCATGACAAAGATACAGAGGTTAGGTACTCCGATCAAGCAGTGCTGGCGAATTTGGATTGGGGTATTGAAGCCCTTGAGGAGGCTCTCAACACATCCAATATAGAAACTAAGTTTGCACGGCTTGACCATGCGGAGAAGATGCTTCAAGTGTGTGCCTTGTTAAACTCTAACGAGAAAACTGCTGGAGTTCCCAATTTCTACCTTTCTGCTTGGGCTCACCTAAATCTTTCTTATCTCTGGAAATTGCGAGGAAATGTTCACAACTCAGTCCTCCATATTCTTGAGATGTTTATTGTGGATCCCTTCTTTTCACGCATTGATTTTGCTCCTGAGCTCTGGAAAGAACTCTTTCTTCCACACATGAGTTCAATCGTTGGGTGGTACTCAGAGGAGAGGCACAGGCTTGTGATCGAAGTGATTCCTGATTCTTCTGATTTATCCTTCACAGCTGATATAGATCAATTCTTCAACGAATCTTTGATATTTTCGCTGAGGCCTGATCAAGTGGAGAAATTACAGAAGTTGGAGAAGCTTTATGGAGAATCTTTGGACGAGAATTCGAGGCTCTTTGCTAAATACTTCAAGGACTGTATGAGTTCTGATTCAAGTTCTACCAAGAAGGTTGCCCCGATGTTGCCAATCGCGGAGCCACCTATGACTCCTCTTCATGAAGTTAGCCGCTCAATTCCCGATTACATTAAATTTGGACCTATTTTACCCAAGAGTGCCGGCTTTTCGTCCATCTTGCTAAGATCTAAAGATGGTGCAACAGAAGCAAGCAGGCCAAAGGGGACTTCCAGTCCAGCCAACAGCTCAGAGAAATTTGCAGGGCGGTATGCTCAGAATGATTCACTAGAGGAGATTGAGAACGATTCTGATCATGAACCTTTCGATTCTTACGAACTTAGCGATACCGTGACACATAAATTACTCTCACCTAGTAGCACAAGGACGTCAGAGGATGAGCAAATAGGACCTAAAGGGGAGACGTCGAAAATGGGGAGTTGCAAACGTTCTCCCACCATTTTTTCTCCAATTTCATCTCCTTCAATCCCTTCACCGAAAGACTTATCTCCAACAGCGAATGAGAAGTGTAAAAATGAATCTCGTTCTGCATTGCGACTGTTATCTAGTCGCTTCGGCGGGCAACGTGTTGCTACCTATGTCCCCAGATCACCAGCTACAGGAAGCGATCACAGCTTCAGTCCAGTAGAGTCTGAGGGTGAAAAAGACCGCCACAGGAGAAGATATAGACAAACGCACAATGCAATCTATAACGACGTGAGTAGCCAAGACTTCGAGAATTGTTTAATCGACAAACTTGAGGAGGAAAGCAGAAGTCGTTCGTCTGAGATTGTGACACATATAGTACGACCCCCTAAAGATTTCGTATGCCCCATAACAGGTCAGATTTTCAGTGAGCCTGTTACTCTTGAAACTGGACAGACTTATGAAAGAAAAGCGATTCAGGAATGGTTGAAAAGAGGAAATACAACTTGCCCCATTACACGGCAGCCATTGTCTTCAACTGTAATGCCTAAAATGAATTATGTCTTGAAAAGACTGATTACGTCTTGGCAGGAACAGCATCCTGATCTTGCTCAGGATTGTTCTTGGACTGGTACATCAGTAGTAAGTACTGTCAGTTCTTCCTTCAAAATGGCGAATTCTCTGGCATCTACTCCTTGCCGACCATTTCACATTCCTCTAAACAGTACGTACGAGTCTCTTAACCAAAAAGGCAAAAGATTAATGCAAGAAGCAGTATCTTCATCGCCGACCAGTGTAATATCCCAGGCCACAGTCGAGAAAATCATTAACAGTTTAAAACCTTTTGTCTCTTGTCTTTGTAATTTCGAAAGCTTGAAACAATGTGAGACAGCTGTGCTCGCTATAGCAGGGTTCTGGAAGGACTCGAAAGGCGATTTAGCGGTCCATTCTTATTTATCCGAATTGGCTGTTGTGAACGGCTTTGTGGAAATACTGTTAAATTCCCGTGAGAGAGAAGTCCTCAGAACCTCGATTTACGTTCTTTCGGAGCTTATTTGTGCTGATGGAAATGTTGGAGAGTCCCTTAGTAGTCTAGATTCTGATTTTTATTGCCTAGCTTCTTTGCTGACGAGTGGGTTGTCAGAGGCTTCTGTTCTTATGTGCCTGCTAAGGCCTACATTTACTCAGTTGTCAGCTCATGACCTTATACCTTCCCTAGCCCAGATGATCCAGAAGAAAAATGAAGAATTTGATCATCTTCCGTTTGTAATAGAGCCAAAAAATGCTGCTATCGCAATGCTCGAACAGATTTTTATGGGAGGGGATGAAACTAGCCAGTCCAGGAATGCTGAGAGGTTTACCTCTGCTGAAGGAATCCCTGCATTAGTCAAGTTTTTGGGTCGGGTAGAAGTGAGGAGGCCAATACTTTCCATACTTTTATGTTGTATGCGGGTCGACCAAGGTTGCAAGGACTCAATAGCAGAGGAGATTGAGCTTGCTCCAGTTCTTGAGTTCCTTCATACTGGAAATGATGACGATAGAGGCCTGTGTGTGGCTTTTCTGTCAGAGCTGGTTCAGATGCACAGACGGACAAAATGCAATCAAATTTTGCAGACAATTAAAGATGAAGGAGCATTCAGTACGATGCATACACTTCTTACATATCTTCGAATGGCTCCAATTGAGCAACAGCCGGGCATTGGTTCTCTTCTTCTCCAGCTGGATCTCCTGACTGAACCACGAAGAATGAGCATTTACCGAGAAGAATCTATAGATGCACTGTTTGAAGCCTTTCGAAGAAAGGACAACTATAATTCTCAAATTGCAGCTGTAGATGCTTCATTATATCTATCTGGGCGATTGACTTCCTCGGGGAAGTCCTACACAGAAGCGTGGTTGCTCAAACTTGCAGGATTTGATCAGCCTTACAATGCTTTGATGAAGGCTGAGGGACTGAGGAAGCCTGACTACGAATTATCAGAGAGAGAGGAGGAAGAGAAGGCAGTCAGCGTATGGGAGAAGAGGATAGCACTTGTTCTTTGTAACCATGAAAAAGGGTACATTTTTGAAGTTATGAAGGAATGCCTGAAGAGTAAATCATTAGAGATGGCAAAGTCCTGTCTTGTCATTGTTTCCTGGCTCTGCCACATGGTTTCGACGCTCCCAGATACTGGGGTACAAGAGACTGCTCGCAGGTTCTTGCTTGATGAACTTGTAAACGTTCTCCAATCTTCTAACAGCCTGGAGGAGAAGATTTTAGCATGCCTTGTTTTGAAAACTTTCATTAGTGACCCAGCTGCACTTGAGGAACTGGGACTTCATGCAACATCCATCAACAAAACGTTGAGAAAGCTCAGGAGAAGTTCTTTGGTGGTCAATGATATAATGAAAGCCTTGATGAACGTGCCATCCGTTGATGCAACAGAGCTCTGGAGTTATACGGAAGTTGGTGCACTAGATTCCAGCTCAAATGGAGAGGTTTTGTCCCTGGTTCATCTGAATGGGCGGGTCTTAAGCAGTCACTCGGACGGAACCATCAAGGTTTGGGATGCTGGAGATAAAGTATTGAAGTTGATCCAAGAAGCACGCAAGCACACAAAAGCTGTAACATGCCTGTGTGTTTCCTCTTCGGGCGACGCATTATACAGCGGTTCCTTAGACAAAACAATCCGGGTATGGACCGTCAAGTGTGAAAAAATACAGTGCGTTCAAGTTCATGAAGTGAAGGAGCCAATCTATGACATGAAAGCCAACGCCAATGTCGCATGCTTTGTTTCTCAAGGAACTGGCGTTAAGGTGTACAACTTCTCTGGAGTTCCCAAGCACATAAATTTCAATAAATACGTCAAGTCCCTGGCATTATCAGAAGATAAACTTTATTGCGGTTGCTCTGGTGACTGTATACTGGAGGTGGATTTGACCAAACATACTACAAGCACATTCTATGCTGGCGTAAGAAAGTTGTTATGGAAACAAAACATCTACTCCTTACACTTACACGGGGACCTGCTGTTTGCTGCCGGTTCAGCAGTGGATGGAACTGCAGGCAAGACATTTTCGCTGTCGAACAAGACAATGGTGGGATCCTTTTCGCCTGGAGTTGACATCCATCACATGGCTGCAAGCACCGACTTGTTGTTTACAGCCTCGAGATTGGGCATGATTATCGAGGTCTTGTCGAAAGAAAAGTATACAAAAATTGGTTCAGTTAAATTAGGTAGTGCTAGTGGTAGCCACACAAAGATTACGTACCTAACTACAGATGATGATGGAGGATTGCTCTTTGTTGGCACCGCTGGCGGAAAGATACAGGTTTGGGGTCTGATGGAATGA 4482 44.11 MAGEYRFAMDQKDIVRLLVATIGDFTRCRLINKEHRNLHKEQCAERLAAEDGSHDKDTEVRYSDQAVLANLDWGIEALEEALNTSNIETKFARLDHAEKMLQVCALLNSNEKTAGVPNFYLSAWAHLNLSYLWKLRGNVHNSVLHILEMFIVDPFFSRIDFAPELWKELFLPHMSSIVGWYSEERHRLVIEVIPDSSDLSFTADIDQFFNESLIFSLRPDQVEKLQKLEKLYGESLDENSRLFAKYFKDCMSSDSSSTKKVAPMLPIAEPPMTPLHEVSRSIPDYIKFGPILPKSAGFSSILLRSKDGATEASRPKGTSSPANSSEKFAGRYAQNDSLEEIENDSDHEPFDSYELSDTVTHKLLSPSSTRTSEDEQIGPKGETSKMGSCKRSPTIFSPISSPSIPSPKDLSPTANEKCKNESRSALRLLSSRFGGQRVATYVPRSPATGSDHSFSPVESEGEKDRHRRRYRQTHNAIYNDVSSQDFENCLIDKLEEESRSRSSEIVTHIVRPPKDFVCPITGQIFSEPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSSTVMPKMNYVLKRLITSWQEQHPDLAQDCSWTGTSVVSTVSSSFKMANSLASTPCRPFHIPLNSTYESLNQKGKRLMQEAVSSSPTSVISQATVEKIINSLKPFVSCLCNFESLKQCETAVLAIAGFWKDSKGDLAVHSYLSELAVVNGFVEILLNSREREVLRTSIYVLSELICADGNVGESLSSLDSDFYCLASLLTSGLSEASVLMCLLRPTFTQLSAHDLIPSLAQMIQKKNEEFDHLPFVIEPKNAAIAMLEQIFMGGDETSQSRNAERFTSAEGIPALVKFLGRVEVRRPILSILLCCMRVDQGCKDSIAEEIELAPVLEFLHTGNDDDRGLCVAFLSELVQMHRRTKCNQILQTIKDEGAFSTMHTLLTYLRMAPIEQQPGIGSLLLQLDLLTEPRRMSIYREESIDALFEAFRRKDNYNSQIAAVDASLYLSGRLTSSGKSYTEAWLLKLAGFDQPYNALMKAEGLRKPDYELSEREEEEKAVSVWEKRIALVLCNHEKGYIFEVMKECLKSKSLEMAKSCLVIVSWLCHMVSTLPDTGVQETARRFLLDELVNVLQSSNSLEEKILACLVLKTFISDPAALEELGLHATSINKTLRKLRRSSLVVNDIMKALMNVPSVDATELWSYTEVGALDSSSNGEVLSLVHLNGRVLSSHSDGTIKVWDAGDKVLKLIQEARKHTKAVTCLCVSSSGDALYSGSLDKTIRVWTVKCEKIQCVQVHEVKEPIYDMKANANVACFVSQGTGVKVYNFSGVPKHINFNKYVKSLALSEDKLYCGCSGDCILEVDLTKHTTSTFYAGVRKLLWKQNIYSLHLHGDLLFAAGSAVDGTAGKTFSLSNKTMVGSFSPGVDIHHMAASTDLLFTASRLGMIIEVLSKEKYTKIGSVKLGSASGSHTKITYLTTDDDGGLLFVGTAGGKIQVWGLME 1493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 445158 451921 + CmaCh09G001010.1 Cma09g00101 300106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00101 1493 CDD RING-Ubox_PUB 516 558 IPR045210 -
Cma09g00101 1493 ProSiteProfiles U-box domain profile. 511 586 IPR003613 GO:0004842|GO:0016567
Cma09g00101 1493 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1245 1279 - -
Cma09g00101 1493 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1491 - -
Cma09g00101 1493 Pfam WD domain, G-beta repeat 1246 1276 IPR001680 GO:0005515
Cma09g00101 1493 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1491 - -
Cma09g00101 1493 MobiDBLite consensus disorder prediction 387 410 - -
Cma09g00101 1493 MobiDBLite consensus disorder prediction 360 374 - -
Cma09g00101 1493 Pfam U-box domain 513 583 IPR003613 GO:0004842|GO:0016567
Cma09g00101 1493 SMART Ubox_2 515 579 IPR003613 GO:0004842|GO:0016567
Cma09g00101 1493 ProSiteProfiles Trp-Asp (WD) repeats profile. 1245 1279 IPR001680 GO:0005515
Cma09g00101 1493 MobiDBLite consensus disorder prediction 309 328 - -
Cma09g00101 1493 SUPERFAMILY ARM repeat 824 1163 IPR016024 -
Cma09g00101 1493 SUPERFAMILY WD40 repeat-like 1218 1491 IPR036322 GO:0005515
Cma09g00101 1493 Gene3D - 642 943 IPR011989 -
Cma09g00101 1493 MobiDBLite consensus disorder prediction 442 467 - -
Cma09g00101 1493 SUPERFAMILY RING/U-box 503 585 - -
Cma09g00101 1493 MobiDBLite consensus disorder prediction 360 418 - -
Cma09g00101 1493 MobiDBLite consensus disorder prediction 312 328 - -
Cma09g00101 1493 Gene3D - 1215 1492 IPR015943 GO:0005515
Cma09g00101 1493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 586 IPR013083 -
Cma09g00101 1493 SMART WD40_4 1452 1490 IPR001680 GO:0005515
Cma09g00101 1493 SMART WD40_4 1195 1233 IPR001680 GO:0005515
Cma09g00101 1493 SMART WD40_4 1238 1277 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00101 - - - csv:101221826 2436.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00101 Cma-Chr9:445158 Cma11g00622 Cma-Chr11:2992255 0 dispersed
Cma09g00101 Cma-Chr9:445158 Cma11g00623 Cma-Chr11:2998384 5.49E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00101 Cma_Chr09 FPKM 5.813904 6.043921 0.0 0.0 0.0 0.0 0.130436 0.176722 0.077668 0.217102