Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00105 ATGTCGCTTCCTGCCCTTGGATCTTTCTCTCCGCTAACATCTCTGGCGTTCAGGGGCCGGCCTCGCTTCGTCATGTCCGGCCGATCCAAAGCCCTCTCTGTTGCGCCAATTTTGACCAAGTTTCAGAAGGATTGCGACACCCCTTTGCCGGTATTGCGCTACGTGGCCGATGCAATGGCCGACAATATGCGGGCTGGGCTCGCTATCGACGGCGGCAGCGATCTCAAAATGATTCTCAGCCATGTCGACACTCTGCCAACTGGGAATGAAAAGGGATTGCTTTATGGATTGGATCTCGGCGGCACCAACTTTCGGGTTCTTAGAGTGCAATTGGGCGGCAAAGAAGAACGTGTTATCGCCACTGAATTTGAACAAGTTTCAATCCCTCAACACCTCATGTTTGCCACATCTCAGGAGCTCTTCGATTTCATTGCCTCTGGTCTGGCAAAATTTGTAGAGGGAGAAGGCAACAGATTCCACCTCCCTCCTGGAAGAAAGAGGGAGATTGGATTCACATTCTCATTCCCTGTGAACCAAACTTCCATTGATTCTGGCATTTTAATCAAGTGGACTAAGGGTTTTGCTGTCTCTGGAACGGCTGGGAAAGATGTCGTTGCTTGTCTAAACGAAGCCATGGAACGACGAGGACTAGATATGCACGTTTCCGCCCTTGTAAATGACACGGTTGGAACCTTAGCTGGAGCTAGATACTACGACGATGATGTCGTGGCTGCTGTGATTTTAGGGACCGGAACCAACGCTTGTTATATAGAACGAAAGGATGCTATTCCTAAGCTGCAAGGCCAGGCATCCTCTTCAGGGAAAACTATTATCAACACGGAGTGGGGAGCATATTCAAATGGTCTTCCTCTCACTGTTTTTGATAGAGAGATGGATGCTGCCAGTATAAATCCAGGGGAGCAGATCTTTGAGAAGACAATAGCAGGAATGTATCTGGGCGAAATTGCTCGTAGAGTGCTTTTGGCAATGGCTGAATTCGCCCCTCTTTTCGGCAAATCAATTCCCGAAAAGCTGTTTACGCCGTTCGTCCTCAGCACTCCAGATCTATGTGCTATGCATCAAGATGTTTCCAATGACCTTCAAGCCGTTGGATTGATCTTGTACAACGTTTTTGGGGTGGAGTCGGATTTAAGTGCAAGAAAAGCTGTGGTAGAGGTGTGCAACACGATTGGTAGGCGGGGCGGGCGATTGGCAGGGGCGGGAATAGTAGGAATCCTGCACAAGATTGAAGACTTTGAAGATGTAAAGCTTGGAAAGAGGAGAGTTGTGGCGATGGATGGAGGATTGTATGAGAATTATCCACAGTACAGGAGGTACCTTAAAGAAGGAGTAGCAGAGCTTTTGGGAACAGAGTTGGCCAAGAATGTGGCCATTGAACATACCAAGGATGGCTCTGGCATTGGGGCTGCTCTTTTGGCTGCTTCAAACTCTATTTATAGAACATGA 1467 48.4 MSLPALGSFSPLTSLAFRGRPRFVMSGRSKALSVAPILTKFQKDCDTPLPVLRYVADAMADNMRAGLAIDGGSDLKMILSHVDTLPTGNEKGLLYGLDLGGTNFRVLRVQLGGKEERVIATEFEQVSIPQHLMFATSQELFDFIASGLAKFVEGEGNRFHLPPGRKREIGFTFSFPVNQTSIDSGILIKWTKGFAVSGTAGKDVVACLNEAMERRGLDMHVSALVNDTVGTLAGARYYDDDVVAAVILGTGTNACYIERKDAIPKLQGQASSSGKTIINTEWGAYSNGLPLTVFDREMDAASINPGEQIFEKTIAGMYLGEIARRVLLAMAEFAPLFGKSIPEKLFTPFVLSTPDLCAMHQDVSNDLQAVGLILYNVFGVESDLSARKAVVEVCNTIGRRGGRLAGAGIVGILHKIEDFEDVKLGKRRVVAMDGGLYENYPQYRRYLKEGVAELLGTELAKNVAIEHTKDGSGIGAALLAASNSIYRT 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 465620 467990 - CmaCh09G001050.1 Cma09g00105 300110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00105 488 PRINTS Hexokinase family signature 95 111 - -
Cma09g00105 488 PRINTS Hexokinase family signature 169 194 - -
Cma09g00105 488 PRINTS Hexokinase family signature 221 237 - -
Cma09g00105 488 PRINTS Hexokinase family signature 244 258 - -
Cma09g00105 488 PRINTS Hexokinase family signature 308 330 - -
Cma09g00105 488 PRINTS Hexokinase family signature 390 412 - -
Cma09g00105 488 PRINTS Hexokinase family signature 466 482 - -
Cma09g00105 488 SUPERFAMILY Actin-like ATPase domain 241 482 IPR043129 -
Cma09g00105 488 Gene3D - 80 480 - -
Cma09g00105 488 PANTHER HEXOKINASE-LIKE 1 PROTEIN-RELATED 28 486 - -
Cma09g00105 488 CDD NBD_sugar-kinase_HSP70_actin 107 258 - -
Cma09g00105 488 Pfam Hexokinase 244 481 IPR022673 GO:0005524|GO:0005975|GO:0016773
Cma09g00105 488 Gene3D - 58 469 - -
Cma09g00105 488 Pfam Hexokinase 38 237 IPR022672 GO:0005524|GO:0005975|GO:0016773
Cma09g00105 488 ProSitePatterns Hexokinase domain signature. 169 194 IPR019807 GO:0004396|GO:0005524|GO:0006096
Cma09g00105 488 SUPERFAMILY Actin-like ATPase domain 33 239 IPR043129 -
Cma09g00105 488 PANTHER HEXOKINASE 28 486 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Cma09g00105 488 ProSiteProfiles Hexokinase domain profile. 32 481 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00105 K00844 HK; hexokinase [EC:2.7.1.1] - csv:101216058 838.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00105 Cma-Chr9:465620 Cma12g01279 Cma-Chr12:9939446 0 dispersed
Cma09g00105 Cma-Chr9:465620 Cma05g01371 Cma-Chr5:10303539 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1105 . Blo12g00884 . . . Bpe04g00247 Bma04g00247 . . . . Cma09g00105 . . . Cpe06g00068 . . . . . . . . . . . . . . . . Cone7ag1884 . . Lsi04g01742 Csa03g04277 Chy04g00420 . . . . . . . . . Sed13g1574 . Cmo09g00101 . . . Car09g00095 . . Bhi09g02092 Tan01g5013 Cmetu04g2766 . Hepe01g1686 Mch11g0120 . Cla05g01871 Cam05g2002 Cec05g2014 Cco05g2072 Clacu05g1994 Cmu05g1875 Cre05g1999 . . . Cme04g00472
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012601 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00105 Cma_Chr09 FPKM 5.811976 5.952393 3.730387 3.560194 14.157182 15.804046 15.169564 6.117082 5.334905 5.324863