Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00108 ATGACGATACCACCCTCTCTCAACGCCTCCTTCTTACATTTCTTGGATCTCTCTTCTCATCAAAACACAAGACTTGCGCATTCTTTTGTTGCCTTCATTTTCATGGCGCTCTTAACTTCCCACCACAATAAACGCCGAAAAAAGCACAAAAACCCATCCCCGCCGCCGCCCTCCGCCCAATCCTCATGGGACCAGATCAAGAGCCTCCTCACCTGCAAACAGATCGAGACTTCGAGAGTTCACGAGCCGGTGAAACGGTCGCCGGCGTACTCGAAGTTGGGGTCTTCTTGCAGCTCCATATGTAGCTTTAGAGACGTGGTTCATGGCAATGCCAAAGTGGTTCATAGAGCCGACAACTCACCCGAAAGCAGCTCCGTCGGCCAGGAAACCAGGTTGCTTCATAGAAAAGCCCCAAACGGTTCCTCATCTCGTTCTTTGACGGCGCCGACACCTGGCAGAAGCAAACACGCTGCTTCAGCTTCTGCTTCTGCTTCCGCTTCCTACTCCTCTTCTTCCAGAGGAATCCAATTACGAAAGCTTTCTGGCTGTTATGAATGTCACACCATCGTTGACCCTACTAGGTACCCAATTCCGAGGAGTTCTATATGTCCTTGTCCTCACTGTGGAGAGGTCTTCCCAAAGCCTGAAAGCTTGGAGCTTCACCAATTAGTTCGCCACGCTGTCTCCGAGTTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATAATTTTCAAGTCAAGCTGGCTGAAAAAGGACCGCCCCATTTGCAAGATCCAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGCTTCGAGGACTGCCGTGATGCAGTGAAGACACGTGCGCTCAACAGCACCAAAAAAAACCCGCGGTGTGCGGCCGACGGTAATGAGCTGTTGAGGTTCCATTGTAGTGCCTTGTTGTGCGACCTCGGCTCACGTGGCTCTACCGGCTTATGCGGCTCGATACCCGACTGCGGTGTCTGCAGCGTCATCCGCCACGGATTCCAGTGCAAGCCCGGTGGGGTCCCTGGCGTACAGACTACTGCCAGTAGCGGTAGGGCCCATGATTCGTTCGGATGCAGCGATGGTCGGCGGCGGGCGATGTTGGTGTGCCGTGTCATCGCAGGGAGAGTCAAGCGTATGGCAGAAGATGGGGCAGGAACAACGACGACGGAGGAGGAGAATATGTCGGCGGCAGGGTCATACGACTCCGTTTCACGACACTCCGGGATGTACTCGAATCTGGAGGAGCTGATCATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTCGTCATCTACGAAGCCCTCCAAACCTAA 1335 53.33 MTIPPSLNASFLHFLDLSSHQNTRLAHSFVAFIFMALLTSHHNKRRKKHKNPSPPPPSAQSSWDQIKSLLTCKQIETSRVHEPVKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLHRKAPNGSSSRSLTAPTPGRSKHAASASASASASYSSSSRGIQLRKLSGCYECHTIVDPTRYPIPRSSICPCPHCGEVFPKPESLELHQLVRHAVSELGPDDSGRNIVEIIFKSSWLKKDRPICKIQRILKVHNTQRTIQRFEDCRDAVKTRALNSTKKNPRCAADGNELLRFHCSALLCDLGSRGSTGLCGSIPDCGVCSVIRHGFQCKPGGVPGVQTTASSGRAHDSFGCSDGRRRAMLVCRVIAGRVKRMAEDGAGTTTTEEENMSAAGSYDSVSRHSGMYSNLEELIIFNPKAILPCFVVIYEALQT 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 472478 474568 - CmaCh09G001080.1 Cma09g00108 300113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00108 444 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 46 443 - -
Cma09g00108 444 MobiDBLite consensus disorder prediction 43 62 - -
Cma09g00108 444 ProSitePatterns Zinc finger C2H2 type domain signature. 203 226 IPR013087 -
Cma09g00108 444 Gene3D - 227 441 - -
Cma09g00108 444 SUPERFAMILY ADP-ribosylation 228 440 - -
Cma09g00108 444 MobiDBLite consensus disorder prediction 114 165 - -
Cma09g00108 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 231 IPR013087 -
Cma09g00108 444 MobiDBLite consensus disorder prediction 117 165 - -
Cma09g00108 444 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 46 443 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01969 Cma09g00108 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02340 Cma-Chr4:16266503 Cma09g00108 Cma-Chr9:472478 1.00E-109 dispersed
Cma09g00108 Cma-Chr9:472478 Cma15g00699 Cma-Chr15:3342709 1.42E-110 dispersed
Cma01g01969 Cma-Chr1:12700578 Cma09g00108 Cma-Chr9:472478 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35579 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00108 - - csv:101222539 664.07