Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00110 ATGTCTAAATGTTTTAAGGTATTCAAGATGATTGGCTCCTTCCTTACCAGAGGACTTGTAATGATTTTTGGCTATGCTTATCCTGCTTATGAGTGTTATAAAACTGTTGAAATGAACAAACCAGAGATTGAGCAACTTCGTTTTTGGTGCCAATACTGGATATTAGTGGCTGTTTTGACAGTTTGTGAGAGGATTGGAGATGCATTCATTTCATGGGTTCCAATGTATAGTGAAGCTAAATTGGCATTCTTTATATATCTCTGGTACCCTAAAACAAAGGGAACAACTTATGTGTATGATTCCTTCTTTAGACCATATGTAGCAAAACATGAGACAGATATTGACCGAAATTTGTTGGAACTAAGGACCAGAGCTGGTGATATGGCTATTATTTACTGGCAGAGAGCTGCAAGCTATGCTCAAACAAGAATATTCGAGATTTTGCAGTATGTTGCTGACCAATCAACAGCAAGGCCTCGCCGGTCTCAGCAACAGCAAGGGTCAAAGGTTCCACCGAACAATGTTCTACCAAAACACCCGGCAACCACTGAAAATCAAGTGCAAATTGATCCAACATCATCTACATCTCAACAACAAAAAGATGTAGCTGAAGAGGTGGGTGTGTCACAAGTTTCAAAACTAAAAACCACATTTGAAGTTCTTAATACTCAGAAAGTGCCAAAATTGACAACCACAGTCGAAGTTCCTAGTACTTCTAAAGGGTTGAAACCATCAACCTCAGTTGAAGCTCCTCCTAATACTCCGAAAGGGTTGAAACCATCAAACTCGATTGAAGTTCCTATTACTCAAAAAGCAGTTGCAGCATCTGAACCAGCTCTAGCCAGCAGCAACCTATCTTTACCATCTGAAATGGAGCCAATGGAGATCGAAACAGTGTCACGTCCAGTGCACGAGAACGAAATTCCTCCCCTTAAAGAGACTGTAATGGAAGACTCCACAATTGTAACTCGCGCGAGATTGAGAAAGACCCGTTCAGGTGCTGCTAATAGCTGA 1014 40.93 MSKCFKVFKMIGSFLTRGLVMIFGYAYPAYECYKTVEMNKPEIEQLRFWCQYWILVAVLTVCERIGDAFISWVPMYSEAKLAFFIYLWYPKTKGTTYVYDSFFRPYVAKHETDIDRNLLELRTRAGDMAIIYWQRAASYAQTRIFEILQYVADQSTARPRRSQQQQGSKVPPNNVLPKHPATTENQVQIDPTSSTSQQQKDVAEEVGVSQVSKLKTTFEVLNTQKVPKLTTTVEVPSTSKGLKPSTSVEAPPNTPKGLKPSNSIEVPITQKAVAASEPALASSNLSLPSEMEPMEIETVSRPVHENEIPPLKETVMEDSTIVTRARLRKTRSGAANS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 478691 482516 - CmaCh09G001100.1 Cma09g00110 300115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00110 337 Pfam TB2/DP1, HVA22 family 28 106 IPR004345 -
Cma09g00110 337 PANTHER HVA22-LIKE PROTEINS 15 333 IPR004345 -
Cma09g00110 337 PANTHER HVA22-LIKE PROTEIN 15 333 - -
Cma09g00110 337 MobiDBLite consensus disorder prediction 156 204 - -
Cma09g00110 337 MobiDBLite consensus disorder prediction 297 312 - -
Cma09g00110 337 MobiDBLite consensus disorder prediction 232 262 - -
Cma09g00110 337 MobiDBLite consensus disorder prediction 284 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00110 K17338 REEP1_2_3_4; receptor expression-enhancing protein 1/2/3/4 - csv:101216294 508.064
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma09g00110 Cma12g00413 CCT
Cma05g00300 Cma09g00110 CCT
Cma09g00110 Cma12g00413 ECH
Cma05g00300 Cma09g00110 ECH
Cma01g01968 Cma09g00110 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01129 Cma-Chr3:7654284 Cma09g00110 Cma-Chr9:478691 1.93E-52 dispersed
Cma06g00507 Cma-Chr6:2382620 Cma09g00110 Cma-Chr9:478691 1.29E-62 dispersed
Cma09g00110 Cma-Chr9:478691 Cma14g00343 Cma-Chr14:1521797 1.50E-52 dispersed
Cma11g01402 Cma-Chr11:9216280 Cma09g00110 Cma-Chr9:478691 5.40E-57 transposed
Cma01g01968 Cma-Chr1:12695695 Cma09g00110 Cma-Chr9:478691 2.82E-155 wgd
Cma12g00413 Cma-Chr12:2137647 Cma09g00110 Cma-Chr9:478691 5.45E-45 wgd
Cma05g00300 Cma-Chr5:1297261 Cma09g00110 Cma-Chr9:478691 7.20E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1095 Blo01g01595 Blo12g00886 . Bda03g00289 Bpe02g00352 Bpe04g00245 Bma04g00245 . Cmo05g00303 Cmo12g00364 Cma01g01968 Cma09g00110 Car01g01539 Car12g00391 Sed01g2489 . Cpe07g00371 Bhi04g00159 Tan02g2062 Cmetu03g2203 . Hepe10g0141 . Lcy13g1921 Cla08g01432 Cam08g1911 Cec08g1487 . Clacu08g1602 . Cre08g1387 Cone4ag1966 Cone7ag1879 Cone17ag1397 Cone20ag0084 Lsi04g01738 Csa03g04272 Chy04g00423 Cme03g01890 . . . . . . . . . Cmo01g02026 Cmo09g00106 Cma12g00413 Cma05g00300 Car05g00248 Car09g00099 Cpe11g00249 Cpe02g00075 Bhi09g02095 . . . Hepe01g1620 Mch11g0124 . Cla05g01875 Cam05g2006 Cec05g2018 Cco05g2077 Clacu05g1999 Cmu05g1880 Cre05g2003 . Csa02g02124 Chy03g01394 Cme04g00475
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001694 1 2 2 1 3 2 4 2 2 2 2 2 4 2 1 4 2 4 3 2 2 2 2 2 2 2 2 3 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00110 Cma_Chr09 FPKM 9.908064 8.854252 9.874071 8.981601 9.908638 10.417354 9.908311 12.188712 10.913252 11.826897