Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma09g00114 | ATGTCGGCCGGACTCGGAAAATGCAGCAAAATCCGCCACATTGTCAGGCTCAGGCAAATGCTCCGACGCTGGCGCAACAAGGCCCGAATGTCCGCTAACCGCATCCCTTCCGACGTACCCGCCGGACATGTGGCTGTCTGCGTTGGAACCAGCTGCCGGCGGTTCGTCGTCAGAGCCGCTTACTTAAACCACCCGGTTTTCAAGAAGCTTCTGGTCCAAGCCGAAGAGGAGTACGGGTTCACCAACCAAGGCCCGTTGGCGATCCCTTGCGACGAGTCGGTTTTCGAGGAAGTCATCCGGTTCATCTCCAGATCCGATTCGCCCAACTCGGGGCGGTTCGTGAAATTAGACGAATTTCAAACTTTCTGCCATATCGGAATCAGAACCGGCCTCGATTTGTGGCCGGAATCTCGGCCTTTGCTTCATGGGTTAGCCGAGAAATCCATCTGGTAA | 453 | 55.85 | MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRAAYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESVFEEVIRFISRSDSPNSGRFVKLDEFQTFCHIGIRTGLDLWPESRPLLHGLAEKSIW | 150 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 506893 | 507345 | - | CmaCh09G001140.1 | Cma09g00114 | 300119 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma09g00114 | 150 | Pfam | Auxin responsive protein | 16 | 101 | IPR003676 | GO:0009733 | |
| Cma09g00114 | 150 | PANTHER | SMALL AUXIN-UP RNA-RELATED | 6 | 143 | - | - | |
| Cma09g00114 | 150 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 6 | 143 | IPR003676 | GO:0009733 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma09g00114 | Cma-Chr9:506893 | Cma19g00707 | Cma-Chr19:7228844 | 8.45E-65 | dispersed | |
| Cma01g01962 | Cma-Chr1:12666544 | Cma09g00114 | Cma-Chr9:506893 | 5.69E-102 | wgd | |
| Cma02g00356 | Cma-Chr2:1739187 | Cma09g00114 | Cma-Chr9:506893 | 1.11E-56 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma09g00114 | K14488 | - | csv:101216342 | 300.056 |