Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00118 ATGAGCTCTGTGGAAGACAAGCTCAAGGCACCAATGGGTTTGATTAATAACACCCCTCAGACTAACCTTCTCGACGAGATGAAATTGCTGAAACAAATGCAAGATCAAACAGGGGCCCGGAAGGCTATTAACTCCGAGCTCTGGCACGCGTGTGCTGGTCCGCTTGTTTCCTTGCCCCATGTGGGGAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCGGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCTAATCTTCCTTCTCAGTTGATGTGCCAAGTTCAAAGTGTTACCTTACATGCTGATAAAGATTCAGATGAAATCTACGCTCAAATGAGCCTTCAACCGGTGAACTCTGAAAAAGATGTCTTCCTAGTTCCGGACTTTGGACTAAGGCCGAGTAAACACCCAAATGAATTCTTCTGCAAAACTTTGACTGCCAGTGATACCAGCACACATGGTGGGTTCTCAGTGCCACGCAGGGCTGCTGAAAAGCTTTTTCCGCCATTGGATTACACAATGCAACCACCAACTCAGGAGCTCGTTGTACGAGACTTGCATGACAATACCTGGACTTTTCGCCACATCTATCGCGGGCAGCCGAAGCGACATCTTCTCACAACTGGGTGGAGTCTATTTGTTGGAGCAAAGAGGCTCAGAGCAGGTGATTCTGTTCTTTTCATAAGGGATGAAAAGTCCCAGTTGCTGATTGGAGTGAGGCGTGCTAACCGGCAACAAACAACATTGCCATCATCGGTACTATCCGCCGACAGTATGCATATAGGAGTTCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGCAGTCCATTCACAATCTTTTACAATCCCAGGGCATGTCCTTCAGAGTTTGTTATTCCCTTAGCCAAATATCGGAAATGTGTATTCGGAACTCAGCTTTCTGCGGGTATGAGGTTCGGGATGATGTTTGAAACAGAGGAGTCGGGAAAACGCCGATATATGGGTACAATTGTTGGGATTAGCGATTTAGATCCACTTAGGTGGCCAGGTTCCAAGTGGCGAAATCTTCAAGTGGAATGGGATGAGCCCGGGTGTTGCGATAAGCAAAACAGGGTTAGTTCATGGGAAATAGAAACTCCGGAAAGTCTCTTCATTTTTCCTTCTCTGACTTCGGGTCTTAAACGTCCATTACACGGCGGATTTTTGGGAGAAACTGATTGGGAAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATATACGAGGGGATCTTTCATATGCTGCGCCAAATCTATGCTCTGAACCACTGATGAAGATGCTACTGAGGCCTCAGCTCGTTAGCCTTCACGGAGCCACCTTACACCAGGATTCAGCTAACAATTTAGTGAAGATACAGGACATGAAGGACATGCAGCCAGAAACCAATTCTAAAATGAAGCAGCTTATTCCGACAGAAACTGCATCTCCCGGGAATCAAAATCCTACACAATCTGATCCCATAAATCCAAATTCATCTCCAAAAGAAAGTCTACCAGGAAAAGCGCACACTTCAGCGGCTACTGAAAGTGAACCTCCAACTGGAGCTGATGATGTTTCAACCAATCAGTCCAATACATTGCCCCCGGTCGGAGATTGTGTGGGGGAAAAACTCACTACTAAAGAAGTGAATATGCAGACCCTTGTGAACCAGCTTTCATTTATGAACCAGAATCAGATCCCCATGCAGTCATGGCCGTTGCAGCCTCAGCTTGAATCACTAATCCAACACCCACAACCAATTGACATGCCTCACCCTGAATTTACACTGGATGGTGATGGATGTTTGATTAACCCATCCTGTCTGGCTCTTCCTGGAGTAATGAGATCACCCGGGAACCTTTCCATGTTGGCATTGCAAGAATCCTCAACAGTCTTCCCTGAGGCTCTTAATTTTCCCTTACCCTCAACTGGGCAAGACATGTGGGATCCTCTTAATAATATAAGATTCTCTTCTAACCTGAATTGTATGGGTAATGCAAATGTTATGAGAGCCGTTTCAGACGAGAGCAACAACCAAAGTGGGATATATAGTTGTTCTAACCTTGAAATCAGTAATGGTGGAAATACTTTGGTTGGTCCTGCTGTTTCGAGTACTATTCTTGATGATTATTGCGCATTGAAAGATGCTGACTTCCCACATCCTTCAGATTGCTTGGTTGGAAACTTCAGCTCAAGCCAAGATGTTCAGTCTCAGATTACCTCTGCTGCTAGTCTTGGAGATTCTCAGGCTTTCTCCAGGCAGGACTTCCATGATAATTCAGGTGGTACTTCCTCTTGCAATGTGGATTTTGATGAGGGCAGTCTTCTGCATAACGGCTCCTGGAATCAAGTCGTACCGCCCATGAGAACTTACACCAAGGTCCAGAAGGCAGGATCTGTTGGGAGGTCTATCGATGTCACTAGTTTTAAGAACTACGACGAACTGTGCTCCGCTATCGAATGCATGTTTGGACTTGAAGGGTTGCTTAATGACCCGAGAGGCTCAGGATGGAAACTGGTTTATGTCGATTATGAGAACGACGTCTTGCTTATTGGCGATGATCCATGGGAGGAATTTGTGAGCTGTGTAAGGTGCATCAGAATCTTGTCACCCTCAGAAGTCAAGCAAATGAGCGAAGAGGGAATGAAGCTTCTCGACAGTGCTATGATGCAAGGCATCAATTGCTCCATGCCAGAAGGTGGCCGAGGTTAA 2739 45.93 MSSVEDKLKAPMGLINNTPQTNLLDEMKLLKQMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQSVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVFGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWESLVKRPMLRVPENIRGDLSYAAPNLCSEPLMKMLLRPQLVSLHGATLHQDSANNLVKIQDMKDMQPETNSKMKQLIPTETASPGNQNPTQSDPINPNSSPKESLPGKAHTSAATESEPPTGADDVSTNQSNTLPPVGDCVGEKLTTKEVNMQTLVNQLSFMNQNQIPMQSWPLQPQLESLIQHPQPIDMPHPEFTLDGDGCLINPSCLALPGVMRSPGNLSMLALQESSTVFPEALNFPLPSTGQDMWDPLNNIRFSSNLNCMGNANVMRAVSDESNNQSGIYSCSNLEISNGGNTLVGPAVSSTILDDYCALKDADFPHPSDCLVGNFSSSQDVQSQITSAASLGDSQAFSRQDFHDNSGGTSSCNVDFDEGSLLHNGSWNQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVKQMSEEGMKLLDSAMMQGINCSMPEGGRG 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 517496 521341 + CmaCh09G001180.1 Cma09g00118 300123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00118 912 SUPERFAMILY CAD & PB1 domains 798 877 - -
Cma09g00118 912 MobiDBLite consensus disorder prediction 487 548 - -
Cma09g00118 912 CDD B3_DNA 148 249 IPR003340 GO:0003677
Cma09g00118 912 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 902 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma09g00118 912 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma09g00118 912 Gene3D - 795 887 - -
Cma09g00118 912 PANTHER AUXIN RESPONSE FACTOR 5 30 902 - -
Cma09g00118 912 ProSiteProfiles PB1 domain profile. 798 882 IPR000270 GO:0005515
Cma09g00118 912 MobiDBLite consensus disorder prediction 487 544 - -
Cma09g00118 912 Gene3D - 313 385 - -
Cma09g00118 912 Gene3D - 147 250 IPR015300 -
Cma09g00118 912 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Cma09g00118 912 Pfam AUX/IAA family 799 885 IPR033389 -
Cma09g00118 912 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Cma09g00118 912 SMART B3_2 149 251 IPR003340 GO:0003677
Cma09g00118 912 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01959 Cma09g00118 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00118 Cma-Chr9:517496 Cma05g00728 Cma-Chr5:4096173 6.72E-36 dispersed
Cma01g01959 Cma-Chr1:12653796 Cma09g00118 Cma-Chr9:517496 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35580 PF02309 AUX_IAA 9.70E-10 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00118 K14486 - csv:101216825 1669.44