Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00125 ATGGCGCGAGGGAAGATCCAGATCAAGCGAATCGAAAACCCTACGAACAGGCAGGTCACCTACTCGAAGCGACGCAACGGCCTGTTCAAAAAGGCCAACGAGCTCACCGTCCTCTGCGATGCCAAAGTCTCCATCATCATGTTTTCCAGCACTGGAAAACTCCACGAGTATATCAGCCCTTCCACCTCGACCAAGGAGCTTTTCGATCAGTACCAGAAGACTTTAGGCGTTGATCTATGGATCTCTCACTACCAGAGAATGCAAGAGAATCTGAAGAAGCTCAAAGACGTGAATCGTAGTCTCCGCAGGCAGATTATGCAAAGGATGGGGGAATGCATGAATGATCTGAGTTTTGAGGAACTGCGCTGTCTTGAGCAAGATATGGATAATGCCGTCAGGATCATCCGTGAACGCAAGTACCGGGTGATATCAAACCAGATTGAAACGCACAAGAAGAAGTTGAAGAGCGTAGGAGAAATACACAAGAGTCTTCTTCAGGAGTTTGATATTGCAACAGAGGAAGATCCACATTATGGGCTGGTGGACAATGGAGGTGTCGGAGTCGGAGTAGGAGTAGGCGGAGGAGATTATGAGTCAATTATGGGGTACCACCCAGGCGGTGCACATCCTCGCATATTCAACTTGCGCCTCCAGCCCAACCACCCCAATATTCACCTTCAACACCCTCCCCCTCCAGATCTTACTACCTATCCACTCCTTGAGTAG 726 49.31 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKELFDQYQKTLGVDLWISHYQRMQENLKKLKDVNRSLRRQIMQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGVGVGVGGGDYESIMGYHPGGAHPRIFNLRLQPNHPNIHLQHPPPPDLTTYPLLE 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 538248 539996 - CmaCh09G001250.1 Cma09g00125 300130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00125 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma09g00125 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma09g00125 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma09g00125 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma09g00125 241 Coils Coil 84 104 - -
Cma09g00125 241 MobiDBLite consensus disorder prediction 224 241 - -
Cma09g00125 241 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Cma09g00125 241 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma09g00125 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Cma09g00125 241 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Cma09g00125 241 PANTHER APETALA3 1 226 - -
Cma09g00125 241 MobiDBLite consensus disorder prediction 220 241 - -
Cma09g00125 241 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Cma09g00125 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma09g00125 241 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma09g00125 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma09g00125 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01941 Cma09g00125 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00125 Cma-Chr9:538248 Cma09g00768 Cma-Chr9:3703771 8.73E-41 dispersed
Cma01g01941 Cma-Chr1:12594843 Cma09g00125 Cma-Chr9:538248 2.41E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35581 PF01486 K-box 1.20E-20 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00125 K09264 - csv:101218008 392.119