Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00126 ATGGCCGATATTGGGAGCTCAGCTTCTGGGAGCAGAATGTGGTGCTCCATTCCCGAGAAGCTTCAACTCCATGCCGCCATGCTGGCCTTGCAGTTTGGCTACGCTGGCTTCCACGTTGTCTCAAGGGCTGCCCTTAATATGGGCATTAGTAAACTTGTGTTCCTTGTTTACAGGAACATCATTGCCTTTCTCCTCCTCCTTCCCTTCGCATATTTCCTCGAAAAGAAGGAACGCCCTCCCATTTCTCTCAATTTCCTCCTTCAATTCTTCCTTCTTGCCCTCGTTGGAATCACCGCCAACCAAGGGTTCTACTTGCTAGGTTTGGAGAACACGTCCCCGACATTTGCATCGGCTATACAAAACTCGGTTCCGGCCATTACATTTCTCATGGCAGCATTACTCCGGATAGAACAAGTGCGACTAAACAGGAAAGATGGTATAGCGAAAGTGATGGGAACAATATGCTGTGTTGCTGGGGCCACAGTGATCACTCTCTACAAAGGTCCAACCATATACAGCCCTGGTGCTTCGCTGCAAGCAGCCACCATCTCACCCATTTTTGCTTCACTTGGGGACGCAAACGGCAAAAGCTGGACCCTGGGCTGCATCTTCTTGATCGGCCATTGCTTGTCCTGGTCTGGATGGCTTGTTTTGCAGGCCCCTGTTTTGAAAAAATACCCGGCTCGTCTCTCTGTCACTTCTTATACATGTTTCTTTGGGATCATCCAATTTGTCTTCATCGCTGCCATTGCTGAGAGAGATTCTCAGGCTTGGCTTTTCCACTCGGGTGGCGAAATTTTCAGCGTTCTCTATGCAGGAGTGGTAGCTTCGGGAATTGCTTTTGCGGTGCAGATATGGTGCATTCAAAGAGGTGGCCCGGTGTTCGTGGCTGTTTATCAACCAGTTCAGACACTCGTTGTCGCTGTCATGGCTTCCTTCGCGTTGGGTGAAGAGTTCTTCTTGGGAGGGATCATCGGGGCAGTGCTGATCATCACCGGCTTATACTTCGTCCTATGGGGCAAAAGCGAAGAGAGAAAATTTGCACTTGAGAAGGCTGCCATACTCTCCGCTTCAGACCACGGTAACAGCAGAGCCCCCGCCCACATCAAGCCCTCCATTACTCAGCCACTTCTCATCCACTCAACAAACGACAACGTTTGA 1161 50.22 MADIGSSASGSRMWCSIPEKLQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFLVYRNIIAFLLLLPFAYFLEKKERPPISLNFLLQFFLLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPGASLQAATISPIFASLGDANGKSWTLGCIFLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGIIQFVFIAAIAERDSQAWLFHSGGEIFSVLYAGVVASGIAFAVQIWCIQRGGPVFVAVYQPVQTLVVAVMASFALGEEFFLGGIIGAVLIITGLYFVLWGKSEERKFALEKAAILSASDHGNSRAPAHIKPSITQPLLIHSTNDNV 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 547880 550187 + CmaCh09G001260.1 Cma09g00126 300131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00126 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 57 167 - -
Cma09g00126 386 PANTHER WAT1-RELATED PROTEIN 15 368 - -
Cma09g00126 386 PANTHER WAT1-RELATED PROTEIN 15 368 IPR030184 GO:0016021|GO:0022857
Cma09g00126 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 343 - -
Cma09g00126 386 Pfam EamA-like transporter family 200 338 IPR000620 GO:0016020|GO:0016021
Cma09g00126 386 Pfam EamA-like transporter family 27 164 IPR000620 GO:0016020|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00275 Cma09g00126 CCT
Cma09g00126 Cma12g00435 CCT
Cma09g00126 Cma12g00435 ECH
Cma05g00275 Cma09g00126 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00126 Cma-Chr9:547880 Cma11g00295 Cma-Chr11:1465378 2.91E-136 dispersed
Cma12g00435 Cma-Chr12:2275723 Cma09g00126 Cma-Chr9:547880 0 wgd
Cma05g00275 Cma-Chr5:1163426 Cma09g00126 Cma-Chr9:547880 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00126 - - csv:101218486 673.7