Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00132 ATGACGAGCGCCTCCCTCGTCAGTTTTTTTCCCCGCCCTTCAATCCCAGAACAATGCTCTTCATGTACTTCTTCGAACCAGAATCGCGCACTTTTCCCCTTCGCCTCAAGAAAGGATTCGAGGAATTCTATCAGAACCCTTTGTAGTACTTTTCAGCAAGAGCCTGTCGTCGTGTCCTCCGACATTCTCCCTTTCCATGGTTCTTTTGTCAAGCCTATTCAGGAAGTAGAAGGAACGAAAGATGCTGATGAGCTCATCCATGGCGTCTCCACCACTGAACCAGAGCCTAAATCGCAGTTATCGAGTAGGGTTAAAAAGAAGGCACAAGAAGACGGGGATAGCCTGGAGAGTAGGTTTAAGCTGCGAAATGGAAGGGAGATTTTTGAAGAACAAGCCTACCTCGTTGGCTTAGAGCGGAAAGGAGATGTTGGCCAACTTTTTAGCATAGACGAATCTCTGAAAGAACTGGCACAGTTAGCTGACACTGCTGGACTAAAGGTCGTTGGTTCAACATATCAAAAACTAGCTTCTCCAAACCCAAGGACTTACATCGGATCTGGCAAAGTTGCAGAAATCAAGAGTGAAATTCATGCATTATGTATAGAGACTGTGATATTTGATGATGAGCTTTCAGCTGGGCAACTGAGAAACTTGGAAAAATCATTTGGTGGAGATGTTAGAGTTTGTGATCGTACTGCCCTAATCCTGGATATCTTCAATCAGAGAGCAGCAACACATGAGGCATCTCTACAGGTGGCATTGGCACAAATGGAATACCAATTACCACGACTTACAAAGATGTGGACTCACCTTGAGCGTCAAGCAGGAGGGCAGGTGAAAGGTATGGGTGAGAAGCAAATTGAAGTGGATAAGCGCATCTTACGAACGCAAATTGGTGTTCTCCGGAAGGAATTAGAGTCTGTTAGGATGCATCGAAAACAGTACAGAAGCCGGCGCTTTTCTGTACCTGTCCCGGTAGTTTCTTTGGTTGGATATACAAATGCTGGAAAGAGTACGCTCTTGAATCAGTTGACTGGAGCTGAAGTCCTTGCAGAGGATCGATTGTTTGCAACCCTTGATCCAACTACAAGAAGGGTTCAGATGAAGAATGGGAACGAGTTTCTACTCACTGATACTGTTGGTTTCATCCAAAAGTTACCAACTATGCTGGTTGCTGCATTCAGAGCAACACTAGAGGAGATATCAGAATCATCATTGCTGGTTCACGTGGTGGACATCAGCCATCCGCTGGCTGAGCAACAGATAGAAGCTGTGGATAAAGTTCTTTCAGAATTGGATGTGTCATCAATTCCGAAGTTGATGGTTTGGAACAAGGTTGACAAGGTTAGTGATCCTCAACATATTAGATTGGAAGCAGAGAAGAGAGGAGACGTTGTTTGTGTATCTGCCCTGAGTGGTGATGGCTTGGACGAATTCTGTAATGCAGTTCAGGGAAAATTGAAGGACTCGATGGTTTGGGTAGAAGCCTTGATCCCATTTGATCGAGGCGAGCTCCTGAGCACTGTGCATCAGGTTGGAGTGGTAGAGAAAACTGAATACACGGAGAACGGAACACTGGTCCAGGCATACGTTCCCCTCAGGTTCTCAAGGCTGCTTACACCAATGAGACAGCTATGTATATCCTGA 1647 45.54 MTSASLVSFFPRPSIPEQCSSCTSSNQNRALFPFASRKDSRNSIRTLCSTFQQEPVVVSSDILPFHGSFVKPIQEVEGTKDADELIHGVSTTEPEPKSQLSSRVKKKAQEDGDSLESRFKLRNGREIFEEQAYLVGLERKGDVGQLFSIDESLKELAQLADTAGLKVVGSTYQKLASPNPRTYIGSGKVAEIKSEIHALCIETVIFDDELSAGQLRNLEKSFGGDVRVCDRTALILDIFNQRAATHEASLQVALAQMEYQLPRLTKMWTHLERQAGGQVKGMGEKQIEVDKRILRTQIGVLRKELESVRMHRKQYRSRRFSVPVPVVSLVGYTNAGKSTLLNQLTGAEVLAEDRLFATLDPTTRRVQMKNGNEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMVWNKVDKVSDPQHIRLEAEKRGDVVCVSALSGDGLDEFCNAVQGKLKDSMVWVEALIPFDRGELLSTVHQVGVVEKTEYTENGTLVQAYVPLRFSRLLTPMRQLCIS 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 569938 577816 + CmaCh09G001320.1 Cma09g00132 300137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00132 548 Pfam GTP-binding GTPase Middle Region 242 319 IPR032305 -
Cma09g00132 548 PANTHER GTP-BINDING PROTEIN 6-RELATED 101 536 - -
Cma09g00132 548 Gene3D - 142 242 IPR042108 -
Cma09g00132 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 497 IPR027417 -
Cma09g00132 548 TIGRFAM GTP_HflX: GTP-binding protein HflX 146 485 IPR016496 GO:0005525
Cma09g00132 548 Pfam GTP-binding GTPase N-terminal 151 239 IPR025121 -
Cma09g00132 548 Gene3D - 243 310 - -
Cma09g00132 548 PRINTS GTP1/OBG GTP-binding protein family signature 327 347 IPR006073 GO:0005525
Cma09g00132 548 PRINTS GTP1/OBG GTP-binding protein family signature 394 412 IPR006073 GO:0005525
Cma09g00132 548 Hamap GTPase HflX [hflX]. 153 516 IPR016496 GO:0005525
Cma09g00132 548 PANTHER GTP-BINDING PROTEIN HFLX 101 536 IPR016496 GO:0005525
Cma09g00132 548 CDD HflX 284 487 IPR030394 GO:0005525
Cma09g00132 548 Pfam 50S ribosome-binding GTPase 327 445 IPR006073 GO:0005525
Cma09g00132 548 MobiDBLite consensus disorder prediction 88 111 - -
Cma09g00132 548 Pfam HflX C-terminal domain 457 526 IPR045498 -
Cma09g00132 548 TIGRFAM small_GTP: small GTP-binding protein domain 326 482 IPR005225 GO:0005525
Cma09g00132 548 Gene3D - 324 491 IPR027417 -
Cma09g00132 548 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 325 491 IPR030394 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00132 K03665 hflX; GTPase - csv:101219907 972.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00132 Cma-Chr9:569938 Cma18g01350 Cma-Chr18:10246382 9.34E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1004 . . . Bda03g00271 . Bpe04g00226 Bma04g00221 . . . . Cma09g00132 . . . Cpe06g00092 . . . . . . . . . . . . . . . . . Cone17ag1363 Cone20ag0118 Lsi04g01703 Csa03g04243 Chy04g00472 . . . . . . . . . . Cmo01g01996 Cmo09g00129 . . . Car09g00118 . . . . . . . . . Cla05g01909 Cam05g2046 Cec05g2055 Cco05g2110 Clacu05g2039 Cmu05g1918 Cre05g2040 . . . Cme04g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011128 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00132 Cma_Chr09 FPKM 8.091691 9.845102 12.21658 10.949113 32.294399 32.912098 35.865372 16.421782 17.968369 15.013187