Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00145 ATGGATTCGTTTGGTGTGACCTTGAAGGCCAATACGATGCCGTTTAGAGCCAGCAGACAGTGTGGTAGGAAGGTGCAATGCTCCGGGTTCTGGGGAGAGAGTATTGAGAGAAGCGGAAAGTGCAAACAGATACAGATGAATGCCTACTCGCGGAAGAATTCTTATTCTTCTTCCCATAGCAGGGCTAGAAAGCTTACGGCGGGAGTTGCTCATTCTGTTCTCATGTCAGAAGTTAGTGAGGAAACAACGACTTTACAGGCTTCTATATTTGAGACTCCTAGAGCTGATCCGAAAAAGATTGCTTCAATCATACTGGGTGGAGGTGCCGGAACTCGCTTGTTTCCTCTTACCAGCCAGCGCGCCAAACCAGCGGTTCCAATTGGAGGTTGTTATAGATTGATCGACGTGCCCATGAGTAATTGCATTAATAGCGGCATCGAAAAGATATTCGTCCTAACGCAGTTTAATTCGTTTTCTCTAAATCGTCACCTTGCTCGTATTTACAATTTTGGTAATGGAGTGAATTTTGGCGATGGATTCGTGGAGGTTCTAGCTGCCACTCAAACTTCGGGTGAAACTGGAAAAAAATGGTTCCAAGGAACTGCCGATGCTGTCAGGCAATTTATATGGTTATTTGAGGATGCCAAGACCAAAAATGTTGAGCACACTCTAATTTTGTCTGGCGATCACCTTTACCGGATGGACTACATGGATTTTGTGCAGAGACATATTGACACAAATGCAGATATTACAGTTTCGTGCATACCCATGGATGATAGCCGAGCATCGGATTACGGTCTCATGAAAATAGACGACACAGGACGTATTTTACATTTTGCAGAGAAACCAAAGGGATCTGACCTGGAAGCAATGCAAGTTGACACTACAGTTCTAGGACTTTCAGATCAAGATGCTAGAAAAAATCCTTATATTGCATCAATGGGAGTCTACGTATTCAGAACTGATCTTCTATTAAAGCTTTTGACATGGACTTATCCTTCATGCAACGACTTCGGCTCAGAAATTATTCCATCGGCTGTTAAAGACTACAAAGTTCAAGCATATCTATTCAATGACTACTGGGAGGACATTGGAACCGTGAAGTCATTTTTTGATGCCAACTTAGCACTAACGGAGCAGCCCCCAAAGTTTGAGTTCTATGATCCGAAGACTCCATTTTATACATCACCTAGATTCTTGCCCCCTTCTAAAGTTGAAAAAAGCAGGATTGTAGATGCAATAATATCTCATGGTTGCTTCCTCCGAGAGTGTAGTGTTGAACACTCTATTGTCGGTGTGCGCTCTCGATTGGAGTACGGTGTGGAGCTTAAGGATACTATGATGATGGGCGCGGACTACTACCAGACTGAATCTGAAATTGCATCTCTGCTTGCCGAAGGTAAGATCCCAATCGGCATTGGAGAGAACACCAAAATCAGGAATTGCATAATTGACAAGAATGCGAAGATCGGAAAAAATGTAGTTATTGCTAATACTGATGGCGTTCAAGAAGCAGATAGACCAGAAGAAGGGTTTTATATAAGGTCCGGTATCACAGTCACGTTGAAGAATGCAACAATAAAAGACGGAACCATTATTTAA 1602 42.88 MDSFGVTLKANTMPFRASRQCGRKVQCSGFWGESIERSGKCKQIQMNAYSRKNSYSSSHSRARKLTAGVAHSVLMSEVSEETTTLQASIFETPRADPKKIASIILGGGAGTRLFPLTSQRAKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEVLAATQTSGETGKKWFQGTADAVRQFIWLFEDAKTKNVEHTLILSGDHLYRMDYMDFVQRHIDTNADITVSCIPMDDSRASDYGLMKIDDTGRILHFAEKPKGSDLEAMQVDTTVLGLSDQDARKNPYIASMGVYVFRTDLLLKLLTWTYPSCNDFGSEIIPSAVKDYKVQAYLFNDYWEDIGTVKSFFDANLALTEQPPKFEFYDPKTPFYTSPRFLPPSKVEKSRIVDAIISHGCFLRECSVEHSIVGVRSRLEYGVELKDTMMMGADYYQTESEIASLLAEGKIPIGIGENTKIRNCIIDKNAKIGKNVVIANTDGVQEADRPEEGFYIRSGITVTLKNATIKDGTII 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 619883 624402 + CmaCh09G001450.1 Cma09g00145 300150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00145 533 Pfam Nucleotidyl transferase 102 379 IPR005835 GO:0009058|GO:0016779
Cma09g00145 533 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 106 125 IPR005836 GO:0005978|GO:0008878
Cma09g00145 533 CDD LbH_G1P_AT_C 401 527 - -
Cma09g00145 533 Gene3D Hexapeptide repeat proteins 399 533 - -
Cma09g00145 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 99 495 IPR029044 -
Cma09g00145 533 SUPERFAMILY Trimeric LpxA-like enzymes 395 533 IPR011004 -
Cma09g00145 533 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 102 497 IPR011831 GO:0005978|GO:0008878
Cma09g00145 533 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 533 IPR011831 GO:0005978|GO:0008878
Cma09g00145 533 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 312 322 IPR005836 GO:0005978|GO:0008878
Cma09g00145 533 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 197 205 IPR005836 GO:0005978|GO:0008878
Cma09g00145 533 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 533 - -
Cma09g00145 533 CDD ADP_Glucose_PP 103 364 - -
Cma09g00145 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 86 398 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00145 K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] - csv:101221562 972.615
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01921 Cma09g00145 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00145 Cma-Chr9:619883 Cma14g01686 Cma-Chr14:12543542 0 dispersed
Cma01g01921 Cma-Chr1:12509775 Cma09g00145 Cma-Chr9:619883 0 wgd
Cma02g00387 Cma-Chr2:1964800 Cma09g00145 Cma-Chr9:619883 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g977 Blo01g01573 . Bda01g00521 Bda03g00267 Bpe02g00380 Bpe04g00221 Bma04g00215 Bma01g02331 . . Cma01g01921 Cma09g00145 Car01g01502 . . Cpe06g00101 . . . . . . . . . . . . . . . Cone4ag1925 Cone7ag1838 . Cone20ag0131 Lsi04g01691 Csa03g04231 Chy04g00484 . . . . . . . . . . Cmo01g01984 Cmo09g00143 . . . Car09g00129 . Cpe02g00115 . . . . . . . Cla05g01921 Cam05g2058 Cec05g2071 Cco05g2122 Clacu05g2052 Cmu05g1929 Cre05g2052 . . . Cme04g00543
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001022 2 5 3 5 3 2 3 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 7 2 3 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00145 Cma_Chr09 FPKM 19.225214 22.289165 67.698647 67.847649 25.863213 23.589403 24.550022 28.957777 28.700417 30.473396