Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00148 ATGCCTCTGAGAGGCATAGTTCGTGAGCAGAGTGAAATACGAGAAGGCAGTGAGAATTCTTCGAGAAAAGTGAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTCCCGGAGCAGCCTTCTTCTTCATCTTTTCCGGTTCCGATCGAACAGAGCCGTTGGGCGAGTTTAACTCCGGAGCTTCTTTTAGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCCCGCCGGGATGTTGTTGCCTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAGTCGTAAGGACTCCCGAACAGTGTGGGTGGATCACTTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGAGACACTCCGATCCAGTGCTTCATCAAGAGAGAAAGAGCAACGTCAACGTTTCGACTTTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTAAGTAAACTTTTGCTTACTGCAAAAAGATTTCGACGAGCCATGAGTACAGAGTTCATTGTATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACAATTACATTGGAAAGTTAAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAGTCAGCCTCCACATGACCCAAAACTGCGAACCAGTAGATCAAAGCGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCGACGAACTATACAGTCGCTGCCGTAGCTTACGAGCTGAACGTCCTCCGCACGAGAGGCCCGAGACGAATGAGGTGCACCATGCATTCAATACCTGTTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCCACGGAGTTTAAGGACTGTATCAATGAGCATCATTCATCGACATCGATTTGCGAAGGTAAGAAGCCGATAATCGAGTCTCCGAAGCCTCAAGAATCAATGGCTCCATTGGTATTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGCTGGTGCCTCAATTTCAAAGGGCGCGTCACGGTAGCCTCAGTGAAAAACTTTCAGCTGGTTGCTGCTGTGGAGACAAGTGAAAATGTGTCTGCAGCTGAACAAGAGCGAGTGATTTTGCAGTTTGGTAAGATTGGGAAGGATATTTTTACGATGGATTATCGGTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGCCTTAGTAGCTTTGACACCAAGCCGGCCTGTGAATGA 1224 47.96 MPLRGIVREQSEIREGSENSSRKVREGVQMRHLGKSHIVPEQPSSSSFPVPIEQSRWASLTPELLLDIIQRVEASETSWPSRRDVVACASVCRSWRMITKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRFRRAMSTEFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSKTPTNYTVAAVAYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDCINEHHSSTSICEGKKPIIESPKPQESMAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVETSENVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 634904 637656 + CmaCh09G001480.1 Cma09g00148 300153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00148 407 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Cma09g00148 407 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Cma09g00148 407 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Cma09g00148 407 PRINTS Tubby superfamily signature 317 334 IPR000007 -
Cma09g00148 407 PRINTS Tubby superfamily signature 335 351 IPR000007 -
Cma09g00148 407 PRINTS Tubby superfamily signature 364 383 IPR000007 -
Cma09g00148 407 PRINTS Tubby superfamily signature 385 407 IPR000007 -
Cma09g00148 407 MobiDBLite consensus disorder prediction 8 27 - -
Cma09g00148 407 SUPERFAMILY Tubby C-terminal domain-like 106 407 IPR025659 -
Cma09g00148 407 Gene3D Tubby Protein; Chain A 115 407 IPR025659 -
Cma09g00148 407 SUPERFAMILY F-box domain 44 100 IPR036047 GO:0005515
Cma09g00148 407 ProSitePatterns Tub family signature 1. 335 348 IPR018066 -
Cma09g00148 407 PANTHER TUBBY-RELATED 1 407 - -
Cma09g00148 407 ProSitePatterns Tub family signature 2. 392 407 IPR018066 -
Cma09g00148 407 Pfam Tub family 118 402 IPR000007 -
Cma09g00148 407 Pfam F-box domain 57 104 IPR001810 GO:0005515
Cma09g00148 407 MobiDBLite consensus disorder prediction 1 27 - -
Cma09g00148 407 Gene3D - 52 105 - -
Cma09g00148 407 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 407 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01916 Cma09g00148 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00753 Cma-Chr4:3838952 Cma09g00148 Cma-Chr9:634904 0 dispersed
Cma09g00148 Cma-Chr9:634904 Cma16g00616 Cma-Chr16:3186287 0 dispersed
Cma01g01916 Cma-Chr1:12484871 Cma09g00148 Cma-Chr9:634904 0 wgd
Cma07g00481 Cma-Chr7:2099589 Cma09g00148 Cma-Chr9:634904 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35583 PF01167 Tub 1.30E-105 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00148 K19600 - csv:101222500 756.518