Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00148 | ATGCCTCTGAGAGGCATAGTTCGTGAGCAGAGTGAAATACGAGAAGGCAGTGAGAATTCTTCGAGAAAAGTGAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTCCCGGAGCAGCCTTCTTCTTCATCTTTTCCGGTTCCGATCGAACAGAGCCGTTGGGCGAGTTTAACTCCGGAGCTTCTTTTAGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCCCGCCGGGATGTTGTTGCCTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAGTCGTAAGGACTCCCGAACAGTGTGGGTGGATCACTTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGAGACACTCCGATCCAGTGCTTCATCAAGAGAGAAAGAGCAACGTCAACGTTTCGACTTTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTAAGTAAACTTTTGCTTACTGCAAAAAGATTTCGACGAGCCATGAGTACAGAGTTCATTGTATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACAATTACATTGGAAAGTTAAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAGTCAGCCTCCACATGACCCAAAACTGCGAACCAGTAGATCAAAGCGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCGACGAACTATACAGTCGCTGCCGTAGCTTACGAGCTGAACGTCCTCCGCACGAGAGGCCCGAGACGAATGAGGTGCACCATGCATTCAATACCTGTTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCCACGGAGTTTAAGGACTGTATCAATGAGCATCATTCATCGACATCGATTTGCGAAGGTAAGAAGCCGATAATCGAGTCTCCGAAGCCTCAAGAATCAATGGCTCCATTGGTATTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGCTGGTGCCTCAATTTCAAAGGGCGCGTCACGGTAGCCTCAGTGAAAAACTTTCAGCTGGTTGCTGCTGTGGAGACAAGTGAAAATGTGTCTGCAGCTGAACAAGAGCGAGTGATTTTGCAGTTTGGTAAGATTGGGAAGGATATTTTTACGATGGATTATCGGTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGCCTTAGTAGCTTTGACACCAAGCCGGCCTGTGAATGA | 1224 | 47.96 | MPLRGIVREQSEIREGSENSSRKVREGVQMRHLGKSHIVPEQPSSSSFPVPIEQSRWASLTPELLLDIIQRVEASETSWPSRRDVVACASVCRSWRMITKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRFRRAMSTEFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSKTPTNYTVAAVAYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDCINEHHSSTSICEGKKPIIESPKPQESMAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVETSENVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 407 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 634904 | 637656 | + | CmaCh09G001480.1 | Cma09g00148 | 300153 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00148 | 407 | PRINTS | Tubby superfamily signature | 173 | 189 | IPR000007 | - | |
Cma09g00148 | 407 | PRINTS | Tubby superfamily signature | 189 | 213 | IPR000007 | - | |
Cma09g00148 | 407 | PRINTS | Tubby superfamily signature | 237 | 264 | IPR000007 | - | |
Cma09g00148 | 407 | PRINTS | Tubby superfamily signature | 317 | 334 | IPR000007 | - | |
Cma09g00148 | 407 | PRINTS | Tubby superfamily signature | 335 | 351 | IPR000007 | - | |
Cma09g00148 | 407 | PRINTS | Tubby superfamily signature | 364 | 383 | IPR000007 | - | |
Cma09g00148 | 407 | PRINTS | Tubby superfamily signature | 385 | 407 | IPR000007 | - | |
Cma09g00148 | 407 | MobiDBLite | consensus disorder prediction | 8 | 27 | - | - | |
Cma09g00148 | 407 | SUPERFAMILY | Tubby C-terminal domain-like | 106 | 407 | IPR025659 | - | |
Cma09g00148 | 407 | Gene3D | Tubby Protein; Chain A | 115 | 407 | IPR025659 | - | |
Cma09g00148 | 407 | SUPERFAMILY | F-box domain | 44 | 100 | IPR036047 | GO:0005515 | |
Cma09g00148 | 407 | ProSitePatterns | Tub family signature 1. | 335 | 348 | IPR018066 | - | |
Cma09g00148 | 407 | PANTHER | TUBBY-RELATED | 1 | 407 | - | - | |
Cma09g00148 | 407 | ProSitePatterns | Tub family signature 2. | 392 | 407 | IPR018066 | - | |
Cma09g00148 | 407 | Pfam | Tub family | 118 | 402 | IPR000007 | - | |
Cma09g00148 | 407 | Pfam | F-box domain | 57 | 104 | IPR001810 | GO:0005515 | |
Cma09g00148 | 407 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cma09g00148 | 407 | Gene3D | - | 52 | 105 | - | - | |
Cma09g00148 | 407 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 407 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01916 | Cma09g00148 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00753 | Cma-Chr4:3838952 | Cma09g00148 | Cma-Chr9:634904 | 0 | dispersed | |
Cma09g00148 | Cma-Chr9:634904 | Cma16g00616 | Cma-Chr16:3186287 | 0 | dispersed | |
Cma01g01916 | Cma-Chr1:12484871 | Cma09g00148 | Cma-Chr9:634904 | 0 | wgd | |
Cma07g00481 | Cma-Chr7:2099589 | Cma09g00148 | Cma-Chr9:634904 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35583 | PF01167 | Tub | 1.30E-105 | CL0395 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00148 | K19600 | - | csv:101222500 | 756.518 |