Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00154 ATGGGAGAGCACACGCAAGTGCAGGTTCAGACTCAGACCCAAAGCCAATCTCAAGCGCAATCGCAAGCTCAGAACACGTTTCATGAATCCTCTAACTCCACAACCACTATCGCCCAAGCTACTGTGTCATTAAGCGAGGTGATGAATGCGCCATCGCAAACCTCTTCTCCGCCATCCAAAATGCCCTTGCGTCCGCGGAAGATCCGGAAGCTCTCGCCTGATGAATCGGATCCAAATTCCTCTCAGGTTGTTGCCATTCCGGATGGGCCGAAACCTATAGCCACCAGCAAATCTAACAAGAGCAAGACGGCCCAGCAACGCGCCGCATTCGCGTCTGCCCCGGTAATGCTTGCCCGATCACTTTCCTGTGAAGGCGAGGTGGAAGTCGCGCTTCGACATCTCCGGAATGCCGATCCGCTCCTTGCACCTTTGATCGACCTTCATCAACGTCCTACCTTCGACAGTTTTCAAACCCCATTCCTTGCCCTTACTAGAAGTATCCTTTATCAGCAGCTGGCTTATAAAGCTGGCACCTCAATCTACACTCGTTTCATCGCTCTCTGTGGCGGCGAGGCTGGCGTTCTTCCTGAAACTGTACTTGCCTTGAGCCCTCAACAGCTCAGGCAAATTGGAATTTCGGGTCGTAAATCTAGTTACCTTCATGATCTTGCGAGGAAGTATCAAAATGGGATTCTTTCAGACCCCGCAATTGTGAATATGGATGATAAATCGCTTTTCACGATGCTTACAATGGTCAATGGAATTGGGTCTTGGTCTGTTCATATGTTCATGATTTTCTCGCTGCACAGACCAGACGTGCTTCCTATCAATGATCTTAATGTTCGCAAAGGTGTTCAACTTCTCTACAATCTTGAAGAGTTGCCTCGACCATCGCAGATGGATCACTTATGTGAGAAGTGGAGGCCGTATCGATCAGTTGGGTCGTGGTATATGTGGAGGTTTGCTGAGGCAAAGGGGGCTTCTTCAAGCGCAGCAGCAATAGCTGCTGGTGCTAGTTTACAACTGCAGCAACAAGAGCACCAGCCAGAGCACCAGCATCAACAGCAGCCGCAGCTTCTTGACCCACTTAATAGCATTCTCAATCTTGGATGCTTAGTGAAAATGAGCACCGGCCTGTGCTTGGGGGCAGTGACTCGGATCGAAAAGAGTACATCTTTGCAGATAGCCCAATCAGTTCATCCACTGAATGATAAATATGCCAATTATGTGGGAGTAGAAGACTCAGCAATGAATATTTGGCTCCTTGAGGTTGATGTCACTTTTAAGGCCGTCAACATGTATCATGTGGCAAGGGATATTGATAGAATGTTCCTCTTGAATGTCTGTGCTTTCAATGTATTTTAA 1365 48.28 MGEHTQVQVQTQTQSQSQAQSQAQNTFHESSNSTTTIAQATVSLSEVMNAPSQTSSPPSKMPLRPRKIRKLSPDESDPNSSQVVAIPDGPKPIATSKSNKSKTAQQRAAFASAPVMLARSLSCEGEVEVALRHLRNADPLLAPLIDLHQRPTFDSFQTPFLALTRSILYQQLAYKAGTSIYTRFIALCGGEAGVLPETVLALSPQQLRQIGISGRKSSYLHDLARKYQNGILSDPAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLNVRKGVQLLYNLEELPRPSQMDHLCEKWRPYRSVGSWYMWRFAEAKGASSSAAAIAAGASLQLQQQEHQPEHQHQQQPQLLDPLNSILNLGCLVKMSTGLCLGAVTRIEKSTSLQIAQSVHPLNDKYANYVGVEDSAMNIWLLEVDVTFKAVNMYHVARDIDRMFLLNVCAFNVF 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 658957 663729 - CmaCh09G001540.1 Cma09g00154 300159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00154 454 Gene3D Hypothetical protein; domain 2 157 270 - -
Cma09g00154 454 CDD ENDO3c 160 321 IPR003265 GO:0006284
Cma09g00154 454 PANTHER BNAC05G15000D PROTEIN 2 371 - -
Cma09g00154 454 SMART endo3end 168 323 IPR003265 GO:0006284
Cma09g00154 454 SUPERFAMILY DNA-glycosylase 155 321 IPR011257 GO:0003824|GO:0006281
Cma09g00154 454 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 2 371 - -
Cma09g00154 454 MobiDBLite consensus disorder prediction 1 60 - -
Cma09g00154 454 Gene3D - 132 320 - -
Cma09g00154 454 MobiDBLite consensus disorder prediction 1 103 - -
Cma09g00154 454 Pfam HhH-GPD superfamily base excision DNA repair protein 165 308 IPR003265 GO:0006284
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00154 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] - csv:101202943 598.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01914 Cma09g00154 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01914 Cma-Chr1:12478966 Cma09g00154 Cma-Chr9:658957 0 wgd
Cma03g00747 Cma-Chr3:5902812 Cma09g00154 Cma-Chr9:658957 4.19E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g952 . Blo12g00907 . Bda03g00261 Bpe02g00389 Bpe04g00215 Bma04g00210 Bma01g02322 . . Cma01g01914 Cma09g00154 Car01g01495 . . Cpe06g00109 . . . . . . . . . . . . . . . Cone4ag1913 Cone7ag1826 . . Lsi04g01669 Csa03g04214 Chy04g00505 . . . . . . . . . . Cmo01g01976 Cmo09g00152 . . . Car09g00136 . Cpe02g00123 . . . . . . . Cla05g01936 Cam05g2079 Cec05g2092 Cco05g2143 Clacu05g2075 Cmu05g1950 Cre05g2071 . . . Cme04g00561
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005031 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00154 Cma_Chr09 FPKM 19.790684 23.113165 23.068563 23.280457 26.498472 26.274612 24.81221 21.575018 20.274433 19.57052