Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00166 ATGGAGAGCGCCTTTGCGAGCGCCTCTGCTATCTCAGACCAGAGGCAGAAGATCGAACAGTATAAGAACATTCTGTATAATGTTTTGTCGTCAAACGATTCAGTCCAAGCCAAGAAGTTTATCGATCACACACTATCTGACGAAGTTCCGCTTGTGGTTTCGCGGCAGCTCTTGCAAACTCTTGCGCAAGAGTTGGGGAAATTGGAGGGTGAGACTCAGAAAGATATCGCCCATTACATCCTCGCACAGATTCAGCCGCGCGTTGTCTCTTTCGAGGAGCAGGTGTTGATTATTCGAGAGAAGCTTGCTGAATTGTATGAATCAGAGCAGCAATGGTCAAAAGCTGCTCAGATGCTCAGTGGCATCGATCTAGATTCTGGAATGAGAGTGATCGACGAGTCATACAGATTATCAAAATGTGTTCAAATTGCTCGTTTATACCTTGAGGATGATGATGCTGTTAATGCTGAGGCTTTTATCAATAAAGCATCATTCTTGGTTAGCAATAGTCAGCACGAAGTCCTTAATTTACAATACAAGGTTTGCTATGCTAGGATCTTAGACTTGAAAAGGAAGTTCTTGGAAGCAGCACTGCGTTATTATGATATATCTCAAATTGAAAAGAGACAAATAGGAGATGAAGAAATCAACGAAGAAGCATTGGAACAAGCTTTATCTGCTGCAGTGACATGCACAATATTGGCTGCTGCTGGTCCACAGCGATCCCGAGTTCTTGCCACATTATACAAAGATGAGCGTTGCTCAAAGTTAAAAATCTATCCAATACTGCAAAAGGTTTACTTGGAGAGAATTTTGAGAAAACCTGAAATTGATGCATTTGCTGAAGAGCTAAAGCCTCACCAGCAAGCCCTTCTGCCAGATAATTTTACTGTGTTGGATCGTGCTATGATTGAGCATAATCTTCTCAGTGCAAGCAAACTCTACACAAATATAAGCTTCGAAGAGTTAGGCACTTTGTTGGGTATTCCTCCTCATAAGGCTGAGAAGATAGCATCCAGAATGATCTACGAGGACAGAATGCGGGGATCAATTGACCAGGTTGAAGCTATTATCCATTTCGAGGACGATATTGAAGAGCTGCAGCAATGGGATCAACAGATTGTTGGTCTTTGTCAAGCGCTGAACGACATCTTTGATAGCATGGCAAATAAAGGGGTCTCCCTTCCCGTCTGA 1194 42.8 MESAFASASAISDQRQKIEQYKNILYNVLSSNDSVQAKKFIDHTLSDEVPLVVSRQLLQTLAQELGKLEGETQKDIAHYILAQIQPRVVSFEEQVLIIREKLAELYESEQQWSKAAQMLSGIDLDSGMRVIDESYRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSNSQHEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIEKRQIGDEEINEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQQALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIPPHKAEKIASRMIYEDRMRGSIDQVEAIIHFEDDIEELQQWDQQIVGLCQALNDIFDSMANKGVSLPV 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 702472 709015 - CmaCh09G001660.1 Cma09g00166 300171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00166 397 SMART PINT_4 294 377 IPR000717 -
Cma09g00166 397 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 1 397 IPR040134 -
Cma09g00166 397 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 294 377 - -
Cma09g00166 397 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 4-LIKE 1 397 - -
Cma09g00166 397 ProSiteProfiles PCI domain profile. 192 365 IPR000717 -
Cma09g00166 397 SUPERFAMILY Winged helix DNA-binding domain 292 365 IPR036390 -
Cma09g00166 397 Gene3D - 291 368 IPR036388 -
Cma09g00166 397 Pfam PCI domain 268 361 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00166 K12178 COPS4, CSN4; COP9 signalosome complex subunit 4 - csv:101204975 752.666
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01896 Cma09g00166 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00587 Cma-Chr2:3462032 Cma09g00166 Cma-Chr9:702472 8.94E-06 dispersed
Cma09g00166 Cma-Chr9:702472 Cma20g01102 Cma-Chr20:8575596 3.62E-06 dispersed
Cma01g01896 Cma-Chr1:12405572 Cma09g00166 Cma-Chr9:702472 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g920 . . . . . . . . . . Cma01g01896 Cma09g00166 Car01g01479 . . Cpe06g00119 . . . . . . . . . . . . . . . . . Cone17ag1332 Cone20ag0144 Lsi04g01649 Csa03g04194 Chy04g00525 . . Blo18g00821 . Bda01g01489 Bpe02g01685 . Bma01g00767 . . Cmo01g01961 Cmo09g00163 . . . Car09g00146 . Cpe02g00138 . . . . . . . Cla05g01954 Cam05g2100 Cec05g2109 Cco05g2166 Clacu05g2092 Cmu05g1968 Cre05g2086 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007182 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00166 Cma_Chr09 FPKM 25.193092 29.551594 22.876429 24.298285 22.163591 22.922825 22.432064 40.479374 37.280876 41.879471