Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00167 ATGGATAACACCGGGAATCCTCATGGCATTCTTGTGCCCCCAGTTGAGGGCGTTGCAGGAGGAGGAACTGCTTATGGATGGAGTGATGGCAGCTTAAACACATCAACTCTCCCCAAAAGATCTATTGATCCCACCGAAGTTCCTACAGCAGATCTAGTTGATGTGTGGTGCATGCTAAGCACAGCAAATGTTGGACCTCAGGAAATGCCTAGGCATTTAGAGCCTATAAATCTTCTGGCAGCTAGAAATGAGAGGGAAAGTGTTCAAATTGCTATGCGTCCAAAAATATCTTGGGGTGGTTCTGGTGTGGCTGGAATTGTGCAAGTTTTTTCTGGTGATTTATGCTCCACATCTGGCGATCGGCTAGTTGTTGGACAATCATTGAGGTTAAGGCGTGTGGTGCCCATATTAGGTGTTCCAGATGCCCTTGTCCCACTTGATCTTCCAGTTAGTCAAATAAACCTTCTTCCAGGAGAAACTACAGCAGTTTGGGTTTCTATTGATGTCCCAAATATGCAACCCCCAGGTCAATATGAGGGAGAAATCATTGTTACTGCTATAAAGACGGATGCAGAATCTTCAACACAGTACCTAGGCAGAGCTGAGAAGCATCAAATATTTAAGGAACTTAAGAGCTGTCTTGATATTATGGAAAATGTTGATGAAAAACCATTGGATGAAGTGGTTGAAAGAGTGAAATCTGCAACTGCTTCTTTAAAAAGAGTTACTCAATCTCCATCATTTTCTGAATTTTATTCTGAGAATGGTTCAATTGATGTGATGGATGAAGATGCCTTTTCAAACCTTTCAATACGTGTAAAGATAATGTTGACAGTTTGGGACTTCACAATACCGGCGACTCCTTCACTTCCTGCCGTATCTGATACTGTAATTGAAGATCGTTTTGGTGTTGAACATGGTACTGATGAGTGGTTTGAGGCATTGGATGAACATTTTAAATGGCTTCTTCAATATAGAATCAGTCCTTATTTCTGCAGATGGGGTGATGGCATGCGTGTTTTGACGTACACTTGCCCCTGGCCAGCTGATCATCCGAAGTCAGATGAATATTTTTCAGACCCACGACTATCAGCTTATGCTGTACCATATAGAGCAGTCTCGAGTGGTAATGCGGCAAAAGATTACTTGCAAAGAGAAGTTGAGATATTGAGGACAAAGGCACACTGGAAGAAAGCTTATTTTTATCTGTGGGATGAGCTTACCACTTCAAACTTTCTATGGCAGCCATTGAATATGGAACATTATGATTCTGTTCGCAGTATGTCTAGTGAGATTCGTGCTTATGCTCCTGATGCTCGTGTATTGACAACATACTACTGTGGACCCAATGATGCGCCTCTTGCACCCACTACGTTTGAAGCATTTGTAAAGGTTCCGAGTTTCTTGCGCCCACATACTCAAATTTATTGCACAAGTGAATGGGTGCTTGGCAATCGAGAGGATCTGGTCAAGGATATAATTGGTGAATTACAACCAGAGAATGGTGAGGAATGGTGGACATATGTGTGTATGGGGCCAGCTGATCCCCATCCAAATTGGCACCTCGGGATGCGAGGTACACAGCATCGTGCTGTGATGTGGCGTGTATGGAAAGAAGGCGGGACAGGATTTCTTTATTGGGGTGCAAACTGTTATGAAAAGGCAACAGTTCCGAGTGCAGAGATAAGATTTAGACGAGGCCTTCCTCCTGGAGATGGAGTGCTTTTCTACCCTGGGGAGGTTTTCTCATCTTCACATGAGCCAGTTGCTTCCATAAGACTTGAGCGTCTTCTTAGTGGTTTGCAGGACATTGAATATCTGAAGCTCTATGCATCAAGATATGGTAGAGACGAGGGGGTTGCTCTTTTGGAGAAGACTGGAGTCTATCAAGGACCTGAGCGATACACTCATGATCACATGCCAATTGATGTTATGCGGGGTGAAGTTTACAACTTATGTCGGTCATAA 1968 43.55 MDNTGNPHGILVPPVEGVAGGGTAYGWSDGSLNTSTLPKRSIDPTEVPTADLVDVWCMLSTANVGPQEMPRHLEPINLLAARNERESVQIAMRPKISWGGSGVAGIVQVFSGDLCSTSGDRLVVGQSLRLRRVVPILGVPDALVPLDLPVSQINLLPGETTAVWVSIDVPNMQPPGQYEGEIIVTAIKTDAESSTQYLGRAEKHQIFKELKSCLDIMENVDEKPLDEVVERVKSATASLKRVTQSPSFSEFYSENGSIDVMDEDAFSNLSIRVKIMLTVWDFTIPATPSLPAVSDTVIEDRFGVEHGTDEWFEALDEHFKWLLQYRISPYFCRWGDGMRVLTYTCPWPADHPKSDEYFSDPRLSAYAVPYRAVSSGNAAKDYLQREVEILRTKAHWKKAYFYLWDELTTSNFLWQPLNMEHYDSVRSMSSEIRAYAPDARVLTTYYCGPNDAPLAPTTFEAFVKVPSFLRPHTQIYCTSEWVLGNREDLVKDIIGELQPENGEEWWTYVCMGPADPHPNWHLGMRGTQHRAVMWRVWKEGGTGFLYWGANCYEKATVPSAEIRFRRGLPPGDGVLFYPGEVFSSSHEPVASIRLERLLSGLQDIEYLKLYASRYGRDEGVALLEKTGVYQGPERYTHDHMPIDVMRGEVYNLCRS 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 709495 716217 + CmaCh09G001670.1 Cma09g00167 300172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00167 655 PANTHER ALPHA-1,6-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE 2 655 - -
Cma09g00167 655 Pfam Domain of unknown function (DUF4091) 542 610 IPR025150 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00167 - - - csv:101205217 1268.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01895 Cma-Chr1:12399417 Cma09g00167 Cma-Chr9:709495 4.38E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g918 . . Bda01g00539 . Bpe02g00399 . . Bma01g02311 . . . Cma09g00167 . . . Cpe06g00120 . . . . . . . . . . . . . . . Cone4ag1899 Cone7ag1812 . . Lsi04g01648 Csa03g04193 Chy04g00526 . . . . . . . . . . . Cmo09g00164 . . . Car09g00147 . . . . . . . . . Cla05g01955 Cam05g2101 Cec05g2110 Cco05g2167 Clacu05g2093 Cmu05g1969 Cre05g2087 . . . Cme04g00602
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011844 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00167 Cma_Chr09 FPKM 18.056595 19.956413 44.129757 42.465477 14.564799 14.460551 15.203483 35.468601 33.1451 33.077892