Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00169 | ATGTTTGATATGGAAAATTGTTCGCCGGTTGCGGTTTCCGGCGATGCTTCTTTATCTTCTTCACGTTATATCGAACCAGTGACGGCGGTAGCCCTGCCGAAGAAGAAACGGAACCTTCCCGGAATGCCAGACCCGACGGCGGAGGTGATTGCTTTGTCGGCGGAGAGTTTGCTGGCGACGAACCGGTTTGTGTGCGAGATATGCAACAAAGGCTTCCAGCGGGACCAGAACCTGCAGCTTCACCGGCGAGGCCACAACCTTCCCTGGAAGCTTCGGCAACGGACTGACAATGAGGTGCGTAAGCGCGTCTATGTCTGTCCGGAACCTACCTGCGTCCACCACAATTCGGCGAGAGCACTCGGCGATCTTACCGGAATAAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAATGGAAGTGCGAGAGATGCTCGAAGAAATACGCGGTAAAATCCGATTGGAAAGCGCATATGAAAACTTGCGGAACTCGAGAGTACAAATGCGATTGTGGCACTTTATTTTCTAGGAGGGATAGTTTTATTACGCATCGAGCCTTTTGCGATGTATTAGCGGAGGAAAGTTCTCGTGCTCAAACCCTAGCAGTTCCATACTCTAAAGCGAAGGAATCGGACACGGTTTCGCCTCCCCCGCCACCGCTCACTCCGACAACCACTGTGGTATCTCCGGCGTTGTCAATTCACAGCTCAGAGCTAGCTGATACTCAGATCAGAGTTTCATCCATATCAACGCCTTCAGCCGCGGCTGTCAATAGTAGCTCAAATGATTTGTTTGGAAATAGTACTGTTTTTGCTCCCTCTGCTTCATCCACGACCGTTGCAGTCTCCAGTTTAGCCTCTACAATTGTGTCTTACGATTGCCCCTCTACTCGCCCTCCTGTTTCCACCGTGAATCCCACCTCGCTCTCTCTCTCCACACCTCTCTATCTTTCCCCCAAAGGATCATCCTCCCTCTTTCCCCGACCTGACCAAGACCGTCTGCAGTACACGTGTTCAACTCAACCGGCGGCCATGTCCGCCACCGCTTTGCTACAGAAGGCAGCGGAAATGGGGGCAACCGCGTCTAATCCATCGTTGTTCCGTGGCATTGGGATGGCTACTACTACTTCTTCAGTTCATGATAGGTCTGCCACTGCTAATGTGAACCGGGATCATCGCAATGGCGCTTCGTTAACGGCTGGGTTATGGCTTGAACTTCCCTCTGGACCGGCTGGTTCTGGTTTGATGATGGCGGGTGGTCCATTTTGCTCGTTTGGAAGTCAGCCCATGACGAGGGATCTTCTTGGGCTTGGCATAGACGGCGGTGGAGCCTCTACTAGTAGATTTTCAGCTCTGATCGCTTCCATGAACGGTGGGTGTGCCTACGACGAAAGCTCCACCGCCGACGCTTGGGATCGAGATGAACAAGATGGAAAATATTGA | 1440 | 52.15 | MFDMENCSPVAVSGDASLSSSRYIEPVTAVALPKKKRNLPGMPDPTAEVIALSAESLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTDNEVRKRVYVCPEPTCVHHNSARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVKSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESSRAQTLAVPYSKAKESDTVSPPPPPLTPTTTVVSPALSIHSSELADTQIRVSSISTPSAAAVNSSSNDLFGNSTVFAPSASSTTVAVSSLASTIVSYDCPSTRPPVSTVNPTSLSLSTPLYLSPKGSSSLFPRPDQDRLQYTCSTQPAAMSATALLQKAAEMGATASNPSLFRGIGMATTTSSVHDRSATANVNRDHRNGASLTAGLWLELPSGPAGSGLMMAGGPFCSFGSQPMTRDLLGLGIDGGGASTSRFSALIASMNGGCAYDESSTADAWDRDEQDGKY | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 719687 | 721995 | + | CmaCh09G001690.1 | Cma09g00169 | 300174 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00169 | 479 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 28 | 466 | - | - | |
Cma09g00169 | 479 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 28 | 466 | - | - | |
Cma09g00169 | 479 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 65 | 85 | IPR013087 | - | |
Cma09g00169 | 479 | Gene3D | Classic Zinc Finger | 63 | 101 | - | - | |
Cma09g00169 | 479 | Gene3D | Classic Zinc Finger | 102 | 187 | - | - | |
Cma09g00169 | 479 | SUPERFAMILY | beta-beta-alpha zinc fingers | 62 | 160 | IPR036236 | - | |
Cma09g00169 | 479 | Pfam | Zinc-finger of C2H2 type | 63 | 85 | - | - | |
Cma09g00169 | 479 | SMART | c2h2final6 | 104 | 134 | IPR013087 | - | |
Cma09g00169 | 479 | SMART | c2h2final6 | 63 | 85 | IPR013087 | - | |
Cma09g00169 | 479 | SMART | c2h2final6 | 139 | 159 | IPR013087 | - | |
Cma09g00169 | 479 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 63 | 85 | IPR013087 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma09g00169 | Cma12g00483 | CCT | |
Cma09g00169 | Cma12g00483 | ECH | |
Cma01g01894 | Cma09g00169 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00169 | Cma-Chr9:719687 | Cma16g00651 | Cma-Chr16:3386134 | 7.78E-110 | dispersed | |
Cma01g01894 | Cma-Chr1:12396752 | Cma09g00169 | Cma-Chr9:719687 | 0 | wgd | |
Cma12g00483 | Cma-Chr12:2520186 | Cma09g00169 | Cma-Chr9:719687 | 7.14E-140 | wgd | |
Cma03g00762 | Cma-Chr3:5974951 | Cma09g00169 | Cma-Chr9:719687 | 1.23E-135 | wgd | |
Cma07g00499 | Cma-Chr7:2152878 | Cma09g00169 | Cma-Chr9:719687 | 3.45E-122 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35584 | PF12874 | zf-met | 0.0034 | CL0361 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00169 | K25869 | - | jre:108995564 | 516.153 |