Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00169 ATGTTTGATATGGAAAATTGTTCGCCGGTTGCGGTTTCCGGCGATGCTTCTTTATCTTCTTCACGTTATATCGAACCAGTGACGGCGGTAGCCCTGCCGAAGAAGAAACGGAACCTTCCCGGAATGCCAGACCCGACGGCGGAGGTGATTGCTTTGTCGGCGGAGAGTTTGCTGGCGACGAACCGGTTTGTGTGCGAGATATGCAACAAAGGCTTCCAGCGGGACCAGAACCTGCAGCTTCACCGGCGAGGCCACAACCTTCCCTGGAAGCTTCGGCAACGGACTGACAATGAGGTGCGTAAGCGCGTCTATGTCTGTCCGGAACCTACCTGCGTCCACCACAATTCGGCGAGAGCACTCGGCGATCTTACCGGAATAAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAATGGAAGTGCGAGAGATGCTCGAAGAAATACGCGGTAAAATCCGATTGGAAAGCGCATATGAAAACTTGCGGAACTCGAGAGTACAAATGCGATTGTGGCACTTTATTTTCTAGGAGGGATAGTTTTATTACGCATCGAGCCTTTTGCGATGTATTAGCGGAGGAAAGTTCTCGTGCTCAAACCCTAGCAGTTCCATACTCTAAAGCGAAGGAATCGGACACGGTTTCGCCTCCCCCGCCACCGCTCACTCCGACAACCACTGTGGTATCTCCGGCGTTGTCAATTCACAGCTCAGAGCTAGCTGATACTCAGATCAGAGTTTCATCCATATCAACGCCTTCAGCCGCGGCTGTCAATAGTAGCTCAAATGATTTGTTTGGAAATAGTACTGTTTTTGCTCCCTCTGCTTCATCCACGACCGTTGCAGTCTCCAGTTTAGCCTCTACAATTGTGTCTTACGATTGCCCCTCTACTCGCCCTCCTGTTTCCACCGTGAATCCCACCTCGCTCTCTCTCTCCACACCTCTCTATCTTTCCCCCAAAGGATCATCCTCCCTCTTTCCCCGACCTGACCAAGACCGTCTGCAGTACACGTGTTCAACTCAACCGGCGGCCATGTCCGCCACCGCTTTGCTACAGAAGGCAGCGGAAATGGGGGCAACCGCGTCTAATCCATCGTTGTTCCGTGGCATTGGGATGGCTACTACTACTTCTTCAGTTCATGATAGGTCTGCCACTGCTAATGTGAACCGGGATCATCGCAATGGCGCTTCGTTAACGGCTGGGTTATGGCTTGAACTTCCCTCTGGACCGGCTGGTTCTGGTTTGATGATGGCGGGTGGTCCATTTTGCTCGTTTGGAAGTCAGCCCATGACGAGGGATCTTCTTGGGCTTGGCATAGACGGCGGTGGAGCCTCTACTAGTAGATTTTCAGCTCTGATCGCTTCCATGAACGGTGGGTGTGCCTACGACGAAAGCTCCACCGCCGACGCTTGGGATCGAGATGAACAAGATGGAAAATATTGA 1440 52.15 MFDMENCSPVAVSGDASLSSSRYIEPVTAVALPKKKRNLPGMPDPTAEVIALSAESLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTDNEVRKRVYVCPEPTCVHHNSARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVKSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESSRAQTLAVPYSKAKESDTVSPPPPPLTPTTTVVSPALSIHSSELADTQIRVSSISTPSAAAVNSSSNDLFGNSTVFAPSASSTTVAVSSLASTIVSYDCPSTRPPVSTVNPTSLSLSTPLYLSPKGSSSLFPRPDQDRLQYTCSTQPAAMSATALLQKAAEMGATASNPSLFRGIGMATTTSSVHDRSATANVNRDHRNGASLTAGLWLELPSGPAGSGLMMAGGPFCSFGSQPMTRDLLGLGIDGGGASTSRFSALIASMNGGCAYDESSTADAWDRDEQDGKY 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 719687 721995 + CmaCh09G001690.1 Cma09g00169 300174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00169 479 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 28 466 - -
Cma09g00169 479 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 466 - -
Cma09g00169 479 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Cma09g00169 479 Gene3D Classic Zinc Finger 63 101 - -
Cma09g00169 479 Gene3D Classic Zinc Finger 102 187 - -
Cma09g00169 479 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
Cma09g00169 479 Pfam Zinc-finger of C2H2 type 63 85 - -
Cma09g00169 479 SMART c2h2final6 104 134 IPR013087 -
Cma09g00169 479 SMART c2h2final6 63 85 IPR013087 -
Cma09g00169 479 SMART c2h2final6 139 159 IPR013087 -
Cma09g00169 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00169 Cma12g00483 CCT
Cma09g00169 Cma12g00483 ECH
Cma01g01894 Cma09g00169 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00169 Cma-Chr9:719687 Cma16g00651 Cma-Chr16:3386134 7.78E-110 dispersed
Cma01g01894 Cma-Chr1:12396752 Cma09g00169 Cma-Chr9:719687 0 wgd
Cma12g00483 Cma-Chr12:2520186 Cma09g00169 Cma-Chr9:719687 7.14E-140 wgd
Cma03g00762 Cma-Chr3:5974951 Cma09g00169 Cma-Chr9:719687 1.23E-135 wgd
Cma07g00499 Cma-Chr7:2152878 Cma09g00169 Cma-Chr9:719687 3.45E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35584 PF12874 zf-met 0.0034 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00169 K25869 - jre:108995564 516.153