Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00172 ATGGCCGGTCGTAAAGACAAATCACATTCAGCTCGCGTGTCTCGAGTCGTCATCGCCATCGCAATCGGAGTTCTTCTTGGGTGTCTTTTTGCTTTCTTCTATCCCCATGGACTTCTCCGCTCTGATCTGCCTCTCCAAAACCGCCGACTCGGGAAATCGGAGTTACAGGTTCAGTCTTCTTCCCCGTGCGAATCTTCAGACCGGTTCAAGAACCTTAAAGCCGACGTGGTTTCAATATTAGGGAAGAACTCCGTGTTGGAGAAGCGTATCAAGGATCTTACGAGGGAGCTGAAGATTGTGGAACAATTAAAAGATCATGCTCAGAAGCAATATTTGGCGCTTGGCGAAAATCACAAGGCTGGTCCATTTGATAGTGTCAAAGGTCTTAGAACAAATCCCACTGTAATCCCTGATGAATCCGTGAATCCTCGATTGGCAAAGCTCCTGGAGAAAGTTGCTATTCAGAAGGAGCTGATTGTGACGCTTGCAAATTCTAATGTTAAATCTATGTTGGAGATTTGGTTTACCAGCATCCAAAATGTCGGTATACACAATTATTTGGTCGTGGCTCTGGACGACCAAACCGAAGAGTTCTGCATATCCCATGATGTTCCTGTCTACAAGAGAGATCCAGACACGAGCATCGACTCGGTGGGAAAGCAAGGAGGCAACCATCAAGTCTCTGCATTGAAGTTTCACATTCTTAGGGAGTTCTTGCAACTGGGATACAGTGTTCTACTCTCAGACGTTGATATCGTCTACTTGCAGAACCCTTTCGATCATCTTTACCGCGATTCGGATGTGGAGTCGATGAGTGATGGTCACAACAATATAACAGCTTATGGATATAACGATGTATTTGATGAACCTGCCATGGGTTGGGCTAGATATGCGCACACTATGAGAATATGGGTTTACAACTCTGGTTTCTTCTTCATTAGGCCTACACTTCCTTCATTGGAGCTTTTGGACCGTGTTGCTGCTCGGCTTTCTCAAGAAAAGGCATGGGACCAAGCCGTTTTCAACGAGGAACTCTTTTATCCTTCTCGTCCCGGACGTGATGGTCTTCATGCCTCCAAGAGAACCATGGACATGTATCTCTTTATGAACAGCAAGATGGTTCTGAATGATCAAACGCTCTTCCAACAAGCTTTACCACCATTGCTTGATACAATGCAGCAGCTGCTACAAGGAGGAGAATCTGTTAGATGGGGCTCGGTTAAAGGGAAGAAAATGGAATCGGACGATGTTGATTTTCACGACGTGTTCGGTGGCCCTCCGAGGAGGCGGTCGTCCGTTCATGAAACGCGGTACAGCTTCTCCGAGACGGTGGATTCCTTCGCATTGAAACGCCGCGATAATGAAGCACCGTCGGGCCGGAGTAGTCGCTGGTCTGGTTTGAATGAGAAACCGGTGTTCGGGGAAGAAGGTGTCCACGGGCGGCGATTTCCGAGCAATGATTTTTACGACGATATCTTCCAAGCCGATGAATCGGTGAGTTCTTCTCCTCGCCGTCATGAGCGTGACCTTTTCTCTTCGATTCCTGGTTCGGGGATTCTAAGTCCTGCTAGACCTCTTCCGCCGCCGGTAGAGCCCTTCGGCAGTTCTTCCCTCCCTGCACAATTAAGCCTACCCTCAAGATTGGCCAAAGGGACTGATTTACCAGCGTTTGGATCGAACCCATTAAGAAACAATGACGGTGGTTTGAATGTAAGCCATACAAATTCTCCTAGGTTCACTCTTTCCAGATTTTCTTCAAGCACATCAAGCCATCGTTCTGGTCTTTTGTCTTCTGAATTCCAAGAACGTGGCAGTGAGGAAGCATCATCCTTTAGAATGTCTGATAATAATGCTATGAGTGGAAACAGTTCAACGAAAGGAGTAGATAGTTTAGAGGATTCTAATGGTAGTGGTCAATTTCAGTTCCATTTCTCCATTTACAAATGGGCAAGCAAAGGGGTGCCTCTGATGATGCCACTGAGAGGAGGGAACGGATCGAGATCAAGAGCAAAGACTATGATCCGAAGAAGCTCGACCTCGACCGATAGGGTAGTGAAGACTAAAAATGAGATGCATTCCCCAACATCAACTATACAGCACATCGATTATCCTCTCGTCTTTCACGAAACTGCAAACGTCGATGACGAAAAGGGAACGGGTTTACTGCCTGACATAGCTGGTGTTGATCAAAGAAAGGCTGGTGGAAGTTTTGAGGAAACAATTTCAGCCGCTCCTTCAGAAAACTTGAGCAGACAAACTTCACCGAGAAATTCAAAAACGAAGACACCTAGTTTCCTAAGTTCAGACATGGAATCTGGGCATAACATTGGCAGAAAGAAAGCTGGGGGGAAAATTTCGGAGTTCGTTAAGATTTTCAACCAAAAACCTGCGTCGAAACCCCGAGACGTAGTCGATTTAGCAAATGATAGCTCTACAAGGAAACAGGAAAGTGCTTCAAAAGCTCAAACAGAAGCAACTGTCAATAAAATAAGGAAGGATGAGAAACCCAAGCTGAATAAGAATACAGATGCTTCCATCAAGGGAGATGATGTTTCCAAGCAATCAGTGGATGATCACTCTGCTAAAAAAGCTGCTAGCTACAGAAGTCCAGCACCAAACACTGTTCATGTTCCCGGTGTCGCAAAGTCTACAACTCCGGACGTGGAGGAGCCCTTCCAAGAGCATTTCTCGGTAAAAGAATTACAACAAGACTATGATGATTCCAGAGTAACAGACAATGGTCGCGAAGGATTACAAGCTATCGATACTAAAATACGGCATTGGTCGAACGGGAAGGAAGGGAACATACGTTCGCTGCTGTCAACTTTGCAATATGTTCTTTGGCCTAAGAGCGGATGGAAGGCTGTTCCTCTGGTTGATATAATCGATGGACATGCAGTTAAGAGATCTTATCAGAAGGCTTTGCTGTACCTTCACCCTGATAAGCTACAACAGAAGGGTGCTTCATCAGATCAAAAGTATATTGCAGCAAAAGTTTTTGAAATACTACAGCTCAATGTTGTTCTATGGATTCATGTAGGAGGCTTGGACTCATTTCAATACGCTGAGTGGACATTGATATATAATCGCGGCATTATGGGAACTGTGATTTTGGCAGAACGGAAGGCAATGAGTATCAATAATCTCTTCATTTTCGTCTCATCTCGCCTTCATATCAATTCGATTCTGGAAGGGATTTTTGTTGACGGATATCTTTCTCGAGCAATGTCTGTGGCTACGAAGCTCCATTCGCACGCTAAACCGGTTTTGGAGTCCCGAGCAATTCTTGGACCCGGCGGGAACAGAGATAGGGCGCCTGAGAAGCCGAAATGTAAACAGGAGACTTTGAAGAACTCAGAGAAGCAGAACAAGGCGCTTCCGGCGATTCCTGAATCGGTTATTCGAGACAATATCTCCATCGGGAGCTCCTGCTCATCCGATTCTTTATCAAGCAACAATTCGGCCAAATTGTTGAATCCGAAAGTGAAGCCTGTGAAGGCTGTTGCTGCCGGAGGTGATCCAAACGTAACCACAACGACGCCTAGGCTCTCGGTTCCGGGGAAACGCTGTGGTTGGATAACGCCTTATTCTGACCCACTTTACATCGCCTTCCATGACGAAGAATGGGGAGTCCCAGTTCATGACGACAGGAAGCTGTTCGAGTTACTTGTACTATCGCAAGCCTTAGCAGAGCTTACTTGGCCCTTGATTCTTTGCAAGAGAGATATATTTAGGAAAGTTTTTAACGATTTTGACCCATCTACCATCGCACAGTTCACACAGAATGAGTTTACGACACTAAAAGAAAATGGCATCCAGCTCCTATCTGAACCAAAGCTTCGTGCAATCGTGGAGAACGCTAATCAAGTACTCAAGATTCAACAGGAATTTGGTACCTTCAGCAACTATTGTTGGAGCTTTGTCAACAAGAAGCCTATAACAAACAGATTTCGATATGCCCGTCAAATACCAGTAAAGACGCCGAAAGCAGAGTTCATGAGCAAGGATTTGCTAAGAAGAGGCTTTCGTTGTGTTGGGCCAACTGTGGTTTATTCCTTCATGCAGGTTACCGGAATTGTTAACGATCACTTAGTCGATTGCTTCAGATATCAAGAGTGCGATGGTATGAAATTAAGAGTAGAAGATCAGCCATCGGAGTTGCTCACCGGAGCTTTGGAGACTAGATCTTGA 4191 45.55 MAGRKDKSHSARVSRVVIAIAIGVLLGCLFAFFYPHGLLRSDLPLQNRRLGKSELQVQSSSPCESSDRFKNLKADVVSILGKNSVLEKRIKDLTRELKIVEQLKDHAQKQYLALGENHKAGPFDSVKGLRTNPTVIPDESVNPRLAKLLEKVAIQKELIVTLANSNVKSMLEIWFTSIQNVGIHNYLVVALDDQTEEFCISHDVPVYKRDPDTSIDSVGKQGGNHQVSALKFHILREFLQLGYSVLLSDVDIVYLQNPFDHLYRDSDVESMSDGHNNITAYGYNDVFDEPAMGWARYAHTMRIWVYNSGFFFIRPTLPSLELLDRVAARLSQEKAWDQAVFNEELFYPSRPGRDGLHASKRTMDMYLFMNSKMVLNDQTLFQQALPPLLDTMQQLLQGGESVRWGSVKGKKMESDDVDFHDVFGGPPRRRSSVHETRYSFSETVDSFALKRRDNEAPSGRSSRWSGLNEKPVFGEEGVHGRRFPSNDFYDDIFQADESVSSSPRRHERDLFSSIPGSGILSPARPLPPPVEPFGSSSLPAQLSLPSRLAKGTDLPAFGSNPLRNNDGGLNVSHTNSPRFTLSRFSSSTSSHRSGLLSSEFQERGSEEASSFRMSDNNAMSGNSSTKGVDSLEDSNGSGQFQFHFSIYKWASKGVPLMMPLRGGNGSRSRAKTMIRRSSTSTDRVVKTKNEMHSPTSTIQHIDYPLVFHETANVDDEKGTGLLPDIAGVDQRKAGGSFEETISAAPSENLSRQTSPRNSKTKTPSFLSSDMESGHNIGRKKAGGKISEFVKIFNQKPASKPRDVVDLANDSSTRKQESASKAQTEATVNKIRKDEKPKLNKNTDASIKGDDVSKQSVDDHSAKKAASYRSPAPNTVHVPGVAKSTTPDVEEPFQEHFSVKELQQDYDDSRVTDNGREGLQAIDTKIRHWSNGKEGNIRSLLSTLQYVLWPKSGWKAVPLVDIIDGHAVKRSYQKALLYLHPDKLQQKGASSDQKYIAAKVFEILQLNVVLWIHVGGLDSFQYAEWTLIYNRGIMGTVILAERKAMSINNLFIFVSSRLHINSILEGIFVDGYLSRAMSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNNSAKLLNPKVKPVKAVAAGGDPNVTTTTPRLSVPGKRCGWITPYSDPLYIAFHDEEWGVPVHDDRKLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKIQQEFGTFSNYCWSFVNKKPITNRFRYARQIPVKTPKAEFMSKDLLRRGFRCVGPTVVYSFMQVTGIVNDHLVDCFRYQECDGMKLRVEDQPSELLTGALETRS 1396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 730445 740479 + CmaCh09G001720.1 Cma09g00172 300177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00172 1396 SUPERFAMILY Chaperone J-domain 918 1004 IPR036869 -
Cma09g00172 1396 MobiDBLite consensus disorder prediction 496 538 - -
Cma09g00172 1396 MobiDBLite consensus disorder prediction 661 693 - -
Cma09g00172 1396 Pfam Methyladenine glycosylase 1197 1369 IPR005019 GO:0006284|GO:0008725
Cma09g00172 1396 PANTHER ARABINOSYLTRANSFERASE RRA3 1 374 IPR044290 GO:0016757|GO:0080147
Cma09g00172 1396 PANTHER ARABINOSYLTRANSFERASE RRA3 791 1009 IPR044290 GO:0016757|GO:0080147
Cma09g00172 1396 MobiDBLite consensus disorder prediction 418 437 - -
Cma09g00172 1396 Gene3D DnaJ domain 913 1007 IPR036869 -
Cma09g00172 1396 MobiDBLite consensus disorder prediction 741 771 - -
Cma09g00172 1396 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Cma09g00172 1396 MobiDBLite consensus disorder prediction 554 634 - -
Cma09g00172 1396 SUPERFAMILY Nucleotide-diphospho-sugar transferases 159 352 IPR029044 -
Cma09g00172 1396 MobiDBLite consensus disorder prediction 810 825 - -
Cma09g00172 1396 MobiDBLite consensus disorder prediction 451 470 - -
Cma09g00172 1396 Coils Coil 83 110 - -
Cma09g00172 1396 Gene3D Hypothetical protein; domain 2 1187 1371 - -
Cma09g00172 1396 SUPERFAMILY DNA-glycosylase 1188 1373 IPR011257 GO:0003824|GO:0006281
Cma09g00172 1396 PANTHER ARABINOSYLTRANSFERASE RRA1-RELATED 1 374 - -
Cma09g00172 1396 PANTHER ARABINOSYLTRANSFERASE RRA1-RELATED 791 1009 - -
Cma09g00172 1396 MobiDBLite consensus disorder prediction 826 864 - -
Cma09g00172 1396 MobiDBLite consensus disorder prediction 610 634 - -
Cma09g00172 1396 Pfam Nucleotide-diphospho-sugar transferase 183 376 IPR005069 -
Cma09g00172 1396 MobiDBLite consensus disorder prediction 1095 1120 - -
Cma09g00172 1396 MobiDBLite consensus disorder prediction 1103 1119 - -
Cma09g00172 1396 MobiDBLite consensus disorder prediction 418 436 - -
Cma09g00172 1396 MobiDBLite consensus disorder prediction 563 604 - -
Cma09g00172 1396 MobiDBLite consensus disorder prediction 739 879 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00172 K20783 RRA; arabinosyltransferase [EC:2.4.2.-] - cmax:111476545 1152.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01891 Cma09g00172 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01360 Cma-Chr1:9690686 Cma09g00172 Cma-Chr9:730445 3.22E-10 dispersed
Cma01g01892 Cma-Chr1:12388132 Cma09g00172 Cma-Chr9:730445 0 dispersed
Cma02g00692 Cma-Chr2:4230237 Cma09g00172 Cma-Chr9:730445 8.50E-20 dispersed
Cma08g00590 Cma-Chr8:3359025 Cma09g00172 Cma-Chr9:730445 1.63E-79 dispersed
Cma09g00172 Cma-Chr9:730445 Cma19g00651 Cma-Chr19:6871014 5.54E-160 dispersed
Cma18g00770 Cma-Chr18:6839465 Cma09g00172 Cma-Chr9:730445 3.93E-13 dispersed
Cma01g01891 Cma-Chr1:12384256 Cma09g00172 Cma-Chr9:730445 0 transposed
Cma04g01574 Cma-Chr4:7984352 Cma09g00172 Cma-Chr9:730445 3.33E-67 transposed
Cma01g01890 Cma-Chr1:12380238 Cma09g00172 Cma-Chr9:730445 3.43E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g905 . . Bda01g00541 . . Bpe04g00208 Bma04g00202 Bma01g02308 . . Cma01g01891 Cma09g00172 Car01g01475 . . . . . . . . . . . . . . . . . . Cone4ag1897 . Cone17ag1326 . Lsi04g01642 Csa03g04186 Chy04g00532 . . . . . . . . . . Cmo01g01954 Cmo09g00167 . . . Car09g00152 . Cpe02g00141 . . . . . . . Cla05g01961 Cam05g2110 Cec05g2121 Cco05g2174 Clacu05g2099 Cmu05g1976 Cre05g2095 . . . Cme04g00612
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005505 1 5 1 2 1 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00172 Cma_Chr09 FPKM 5.048312 4.938046 3.208382 3.560625 7.460827 7.395861 7.689373 2.485278 2.702774 2.754523