Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma09g00176 | ATGCCCTCCGCACTTGTCCTCCTCCTCCTCCTCCTCCTCCTCGCCGTCTCCGCGGCCGCCAATGCCGCAAATTTCAGAGAAGCCCCCCAATTTTACAATTCCCCAGATTGCCCCTCCATTGCCGAAGACCTCGAGGACCCCGACGCGAACGAACAACATCTCTGCTTCGATCGCGCCGTCCATGTCGCGATGACGTTGGATACCGCCTATATACGTGGCTCCATGGCCGCCGTTCTTTCCGTCCTCCAACACAGTTCTTGTCCCCAAAACGTAATTTTCCACTTCGTCTATTTCGCATCCGCCAACGTTTCGTCTTTACGCGCCGTCGTCTCCCGCTCATTCCCTTACCTGAAATTCCAACTCTACCCTTTCGACGAGGAGGCGGCATCGCGATTCATCTCCACGTCAATCCGATCCGCGTTGGATTGTCCGTTGAACTACGCACGTAGCTACTTGGGCAGCCTCCTTCCCACGTGCGTCGGCCGGGTCGTTTACCTTGACTCGGATCTAATCCTAGTCGACGACATTGCCAAACTCGCCGCCCACCCACTCGGCGGGGACTCGGTCCTTGCCGCGCCGGAGTACTGCAACGCCAATTTCACCACCTATTTCACGCCATCGTTTTGGTCCAACCCGTCTCTGTCTTTGACGTTTGCGAACCGGAAAGCGTGTTACTTCAACACTGGGGTTATGGTGATCGATCTGGACCGGTGGCGGGCCGGAGATTACACGGCCAAGATCGAGGATTGGATGGAATTGCAAAAGAGGATGAGAATCTACGAATTGGGGTCGTTGCCGCCGTTTTTGTTGGTGTTCAGCGGGAGGATTACTCCAGTGGACCACCGGTGGAACCAGCACGGGCTGGGCGGCGATAATATCAGAGGGCTGTGCAGGAATCTGCACCCTGGTCCAGTAAGTTTGTTGCACTGGAGTGGGAAAGGTAAACCGTGGGATCGGTTGGACGCGAACCGGCCCTGCCCTGTGGACGCCCTTTGGGCTCCATATGATTTGTTACAGACCCCATTTTCGATTGACTCTTAA | 1041 | 56.0 | MPSALVLLLLLLLLAVSAAANAANFREAPQFYNSPDCPSIAEDLEDPDANEQHLCFDRAVHVAMTLDTAYIRGSMAAVLSVLQHSSCPQNVIFHFVYFASANVSSLRAVVSRSFPYLKFQLYPFDEEAASRFISTSIRSALDCPLNYARSYLGSLLPTCVGRVVYLDSDLILVDDIAKLAAHPLGGDSVLAAPEYCNANFTTYFTPSFWSNPSLSLTFANRKACYFNTGVMVIDLDRWRAGDYTAKIEDWMELQKRMRIYELGSLPPFLLVFSGRITPVDHRWNQHGLGGDNIRGLCRNLHPGPVSLLHWSGKGKPWDRLDANRPCPVDALWAPYDLLQTPFSIDS | 346 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 749396 | 750436 | + | CmaCh09G001760.1 | Cma09g00176 | 300181 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma09g00176 | 346 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 60 | 337 | IPR029044 | - | |
| Cma09g00176 | 346 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 61 | 325 | IPR029044 | - | |
| Cma09g00176 | 346 | PANTHER | GALACTURONOSYLTRANSFERASE-LIKE 1-RELATED | 10 | 346 | - | - | |
| Cma09g00176 | 346 | PANTHER | GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN | 10 | 346 | - | - | |
| Cma09g00176 | 346 | Pfam | Glycosyl transferase family 8 | 61 | 319 | IPR002495 | GO:0016757 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma05g00219 | Cma09g00176 | CCT | |
| Cma09g00176 | Cma12g00497 | CCT | |
| Cma05g00219 | Cma09g00176 | ECH | |
| Cma09g00176 | Cma12g00497 | ECH | |
| Cma01g01887 | Cma09g00176 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma09g00176 | Cma-Chr9:749396 | Cma08g00450 | Cma-Chr8:2531399 | 1.67E-131 | dispersed | |
| Cma01g01887 | Cma-Chr1:12360780 | Cma09g00176 | Cma-Chr9:749396 | 1.89E-76 | wgd | |
| Cma12g00497 | Cma-Chr12:2578149 | Cma09g00176 | Cma-Chr9:749396 | 0 | wgd | |
| Cma03g01030 | Cma-Chr3:7170241 | Cma09g00176 | Cma-Chr9:749396 | 0 | wgd | |
| Cma05g00219 | Cma-Chr5:926435 | Cma09g00176 | Cma-Chr9:749396 | 0 | wgd | |
| Cma07g00751 | Cma-Chr7:3335630 | Cma09g00176 | Cma-Chr9:749396 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma09g00176 | K20893 | - | csv:101211531 | 620.157 |