Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00178 ATGTGCAGCGGCGTTTGCATTTATATTGTTACTTGGAACATGAACGGGCAAGCGCGTTATGGGGATTTGGAAAAGCTGGTCGGAGGAAAAGGTGGCAACCGGGAATTTGAGCTCTTCGTTGTCGGGTTGCAGGAGGTGCCACGGTCGGATGTTTCCCGCCTGTTGCAGTCGGCTTTGGCTGAGTCTCACATGTTGGTAGGAGAAGCAACCATGCAATCTCTGCAACTCTATGTGTTCTGCTCCAAGAACTCGGACTGTTTTATCAAAGAGGTGAAGGTGGATAAACAATCAATCGGAGGGTGTGGCGGATTGATGAGAAGAAAGAAAGGTGCTGTGGCCATTTTCTTAATTACTCGGGGCATCCGAATGCTCTTCATTTCTTGTCATCTCTCTGCTCACGCTCACAAGGTAGAGGAGAGGAACTCGGAGTGCAAACATATAACGCACTCGTTATTTTCAAAGAAATGGAACCCTTATGCATTGCCCGCTCAAGTCACCGTTTGGTTGGGGGACCTCAACTACAGAATTGAAGGGATCAGCACACACCCAGCTCGGAATTTGATCCGTAAAAATCTTCTTTTCCTGCTAAGGAGCAGAGATCAGCTTCTGCAAGAAGCGGAAAGAGGACGCATATTCGATGGCTACTGCGAAGGAACATTGTCGTTCAAACCGACCTACAAATACAACGTCGGAAGTAGCAAATACGACAGCAGTTATAAGGTGAGAGTACCATCGTGGACGGACAGGATCTTGTTCAAAGTAGATGAGAAGGAGAAGGTTAGTGCAAATTTATGTTCCTATGACTCAATGGATGAGATTTACAGTTCCGACCACAAGCCAGTTAAAGCTCAGCTTTGTCTTCGACTGACAAACACATCCTCGTCTTAG 888 46.85 MCSGVCIYIVTWNMNGQARYGDLEKLVGGKGGNREFELFVVGLQEVPRSDVSRLLQSALAESHMLVGEATMQSLQLYVFCSKNSDCFIKEVKVDKQSIGGCGGLMRRKKGAVAIFLITRGIRMLFISCHLSAHAHKVEERNSECKHITHSLFSKKWNPYALPAQVTVWLGDLNYRIEGISTHPARNLIRKNLLFLLRSRDQLLQEAERGRIFDGYCEGTLSFKPTYKYNVGSSKYDSSYKVRVPSWTDRILFKVDEKEKVSANLCSYDSMDEIYSSDHKPVKAQLCLRLTNTSSS 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 753541 756048 - CmaCh09G001780.1 Cma09g00178 300183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00178 295 Gene3D Endonuclease/exonuclease/phosphatase 3 295 IPR036691 -
Cma09g00178 295 SUPERFAMILY DNase I-like 5 289 IPR036691 -
Cma09g00178 295 Pfam Endonuclease/Exonuclease/phosphatase family 10 278 IPR005135 GO:0003824
Cma09g00178 295 SMART i5p_5 3 293 IPR000300 GO:0016791|GO:0046856
Cma09g00178 295 PANTHER INOSITOL 5-PHOSPHATASE 4 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00178 - - - cmax:111473705 596.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00178 Cma-Chr9:753541 Cma10g00842 Cma-Chr10:4008667 4.82E-27 dispersed
Cma09g00178 Cma-Chr9:753541 Cma11g00926 Cma-Chr11:4843679 1.24E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g876 . . . . . . . . . . . Cma09g00178 . . . Cpe06g00127 . . . . . . . . . . . . . . . . Cone7ag1796 . . . . . . . . . . . . . . . . Cmo09g00174 . . . Car09g00159 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015462 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 1 1 1 0 0 1 1 1 12
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00178 Cma_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.401948 0.424106 0.379987 0.403768