Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00183 ATGGAAATTACTCACATCTTACCTGCAATCTTCGCCCTTCTCCTCCTTCTCTATGCTCTCTTTCGTATAGCTTCTCCGAGATCCGCCGCTCACCTCACCAACAAGACACTTCCACCTGAAGCCGCCGGTCGTTTGCCACTGATCGGCCACCTCCATAAACTAAGTGCAACAGAGCCAACTCACATAACATTAGCCAAAATGGCCGACGCCTACGGACCTATTTTTACCTTAAGATTGGGCATGAACACAGCCCTTGTCGTGAGCAGTTGGGAAATAGCGCGAGAGTGTTTCACCACAAACGACAGAATTTTCGCTTCCCGCTCAAAAGTTGTTGCCTCAGAGCTGCTCGGCTACAACTACGCAGCCTTGGGAATTAGCCCCTACGGTCCATACTGGCGCAAAGTGCGCAAACTAGCCACGCTTGAACTGTTGACGAACCATCGCCTCGAGCAGCTCCAACACATTAGAATATGTGAGGTTCAAAATTCGATCAAGAAATTGTATGAGTTATGTGCCGACAGCAGAAATAAAGGGTCCGGTGGGAAAGTGAGGGTTGAGATGAGGACGTGGTTTGGGGATGTAAGTTTGAATACAATATTTAGGATGGTGGTCGGAAACCGATTCAGCGCTGTTTTCGAAGGCAGTGGTGCGGAGCAGTACAGAGAGGCGTTGAGGGCTTTTTTTGAACTGTTTGGGGCATTTGTTCCTTCAGATTCGTTTTCGTGCCTAAGTTGGTTGGATTTGGGAGGGCATAAGAAGGCCATGAATAAGACGGCTAAGGTGCTTGATGAGATGCTTAGTAAATGGATCAAAGAGCATCGAGAGAAGAAGAAGAATTGGGGTGAAGGTGGAGTGGAAACAGAGGAGCAAGACTTCATGGATGCCATGCTTTCTGCTGTCGACGACGACGGAGGGTTATGTGGTTTTGATGCTGATACAATCACCAAAGCTACTTGTTTGTCGATGATGTTGGGTGGATACACTACTATGATTGCTACGACATGGGCTCTTTCCCTACTCCTCAACAATCAAGAAACACTTAAGAAGGCCCAACTTGAATTAGATGAAAAAGTTGGAACATCAAGACAAGTAAAAGAGGCCGACTTAAAAAATCTGATATATTTCCAAGCCATTGTGAAGGAGACATTGCGTTTATATCCTGCCGCGCCGCTTTTAATCCCTCATGAATCTATAGAAGATTGTATGGTTTCAGGCTATCATATTCCTGCAAGGACACGCCTTTTAGTGAATGTTCAAAAACTGCAAAAAGACCCACTTGTTTGGGAGGATCCGTGTGAATTTCGTCCAGAAAGATTCTTAACCAACGACACAAAGTTTGATATGCAAGGACAAAATATGCAACTAATGCCATTTGGAAAGGGTAGGCGGATGTGTCCTGGAATGTCATTTGCCCTTCAACTTGTGCATCTTACTCTTGCAAGTCTACTTCATGAATTTGAAATTGATAGACTATCTGAAGAATTATTGGACATGGAAGAGGAAAAACTCCGCTTGAAATTGTTTTAA 1527 44.86 MEITHILPAIFALLLLLYALFRIASPRSAAHLTNKTLPPEAAGRLPLIGHLHKLSATEPTHITLAKMADAYGPIFTLRLGMNTALVVSSWEIARECFTTNDRIFASRSKVVASELLGYNYAALGISPYGPYWRKVRKLATLELLTNHRLEQLQHIRICEVQNSIKKLYELCADSRNKGSGGKVRVEMRTWFGDVSLNTIFRMVVGNRFSAVFEGSGAEQYREALRAFFELFGAFVPSDSFSCLSWLDLGGHKKAMNKTAKVLDEMLSKWIKEHREKKKNWGEGGVETEEQDFMDAMLSAVDDDGGLCGFDADTITKATCLSMMLGGYTTMIATTWALSLLLNNQETLKKAQLELDEKVGTSRQVKEADLKNLIYFQAIVKETLRLYPAAPLLIPHESIEDCMVSGYHIPARTRLLVNVQKLQKDPLVWEDPCEFRPERFLTNDTKFDMQGQNMQLMPFGKGRRMCPGMSFALQLVHLTLASLLHEFEIDRLSEELLDMEEEKLRLKLF 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 770192 771820 - CmaCh09G001830.1 Cma09g00183 300188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00183 508 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 Pfam Cytochrome P450 43 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 PANTHER CYTOCHROME P450 37 501 - -
Cma09g00183 508 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Cma09g00183 508 SUPERFAMILY Cytochrome P450 43 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 Gene3D Cytochrome P450 30 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00183 508 PANTHER CYTOCHROME P450 82C3-RELATED 37 501 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00183 - - - cmax:111476389 831.632
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00183 Cma-Chr9:770192 Cma09g00188 Cma-Chr9:783152 0 dispersed
Cma09g00183 Cma-Chr9:770192 Cma09g00185 Cma-Chr9:775094 0 proximal
Cma01g01879 Cma-Chr1:12314351 Cma09g00183 Cma-Chr9:770192 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g857 . Blo12g00923 Bda01g00555 Bda03g00240 Bpe02g00413 . . . . . . Cma09g00183 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01624 Csa03g04166 Chy04g00549 . . . . . . . . . . Cmo01g01943 Cmo09g00179 . . . Car09g00162 . . Bhi09g02056 . . . . . . . . . . . . . . . . Cme04g00637
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00183 Cma_Chr09 FPKM 4.456017 4.283516 9.239692 8.758425 0.43531 0.346876 0.635885 0.140291 0.138248 0.0