Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00185 ATGGCCGACGTCTACGGACCTATCTTTACCTTAAGATTGGGCATGAACACAGCCCTTGTCGTGAGCAGTTGGGAAATAGCGCGAGAGTGCTTCACCACAAACGACACAATTTTCGCATCCCGCCCAAAGGGTTTAGCCCCAGAGCTGCTCGGCTACAACAGCGCAATGATGGCGATTAGCCCATACGGTCCATACTGGCGCCATGTGCGCAAACTAGCCACGCTTGAACTCTTGACAAACCATCGCCTCGAGCAGCTCCAACACATTAGAATATCCGAGGTTCAAAGTTCGATCAAGAAACTGTATGAGTTATGCGCCGACAGCACAAGTAAGGGATCAGGTGGGAAAGTGAGGGTTGAGATGAGGAAGTGGTTTGGGGATGTAAGTCTGAATACAATATTTAGGATGGTGGTGGGAAAGCGATTCAGCGCTGTTTTCGAAGGCAGTGGTGGGGAGCAGTACCGACGAGCATTGAGGGATGTTTTTGAACTGTTTGGGGCATTTGTTCCTTCAGATTCGTTCCCATGTCTAAGTTGGTTGGATGTGGGAGGGTATAAGAGGGCCATGAACAAGACCGCCAAGGTGCTTGACGAAATGCTTAGTAAATGGATCGAAGAACATCGAGAGAAGAAGAAGAATTGGGGTGAAGGTGGAGTGGACACAAAGGAGCAAGATTTCATGGATGTCATGCTTTCTGCTGTCGGCGACGACGGAGGGTTATGTGGTTTTGATGCGGATACAGTCACCAAAGCCACTTGTTTTGCCATCATATTGGGTGCATCCGACACTACAATAATTACTATGACATGGGCTCTTTCTCTACTCCTCAACCATCCAGAAGCACTCAGGAAGGTACAACTTGAATTAGATGAAAAAGTTGGAAGATCAAGACAAGTGAAAGAATCCGATGTCAAAAATCTATTGTATCTCCAAGCCATTATGAAGGAGACATTGCGTTTATATCCTGCCGCGCCGTTACTAATCCCTCATGAATCTGTAGAAGATTGTACAGTTTTAGGTTATCATATTCCAGCAAGGACACGTCTTATAGTGAATGTTCAAAAGCTGCACAAAGATCCACTTATTTGGGAGAATCCTTGTGAATTTCGTCCAGAAAGATTCTTAACAAGCGACACAAAGTTTGACATGAGAGGACAAAATCAGCAACTAATGCCATTTGGAAGTGGTCGAAGAATGTGTCCTGGAATCCTGTTTGCCCTTCGATTTATGCATTTTATCCTTGCAAATCTACTTCAGAAATTTGAAATTGAGAGGCCATCCGAAAAATTACTTGACATGGAAGAGGGTTTTGGATCAACTGTCTCAAGAAAAACTCCACTTGAAGTTGTTTTAATGAAAAATTACAAAAATCAAATCAATTTGTATAGACCCCGCGCCCATCCTACCAACAACACACTTCCACCTGAAGCCGCCCGTGTTTTTGTAGAAGCTAATAATAGAAAAAGTAGTAATTTGAATTTAGTCACTACGTCAGATAGCCCAAAGTCTCGATCGTTAGCTCTCGGTCTTCCAGTTAAAAAACAACGTCGATGA 1554 44.08 MADVYGPIFTLRLGMNTALVVSSWEIARECFTTNDTIFASRPKGLAPELLGYNSAMMAISPYGPYWRHVRKLATLELLTNHRLEQLQHIRISEVQSSIKKLYELCADSTSKGSGGKVRVEMRKWFGDVSLNTIFRMVVGKRFSAVFEGSGGEQYRRALRDVFELFGAFVPSDSFPCLSWLDVGGYKRAMNKTAKVLDEMLSKWIEEHREKKKNWGEGGVDTKEQDFMDVMLSAVGDDGGLCGFDADTVTKATCFAIILGASDTTIITMTWALSLLLNHPEALRKVQLELDEKVGRSRQVKESDVKNLLYLQAIMKETLRLYPAAPLLIPHESVEDCTVLGYHIPARTRLIVNVQKLHKDPLIWENPCEFRPERFLTSDTKFDMRGQNQQLMPFGSGRRMCPGILFALRFMHFILANLLQKFEIERPSEKLLDMEEGFGSTVSRKTPLEVVLMKNYKNQINLYRPRAHPTNNTLPPEAARVFVEANNRKSSNLNLVTTSDSPKSRSLALGLPVKKQRR 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 775094 777828 - CmaCh09G001850.1 Cma09g00185 300190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00185 517 Pfam Cytochrome P450 3 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00185 517 Gene3D Cytochrome P450 1 460 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00185 517 SUPERFAMILY Cytochrome P450 2 452 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00185 517 PANTHER CYTOCHROME P450 1 454 - -
Cma09g00185 517 PRINTS P450 superfamily signature 312 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00185 517 PRINTS P450 superfamily signature 391 400 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00185 517 PRINTS P450 superfamily signature 259 276 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00185 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 393 402 IPR017972 GO:0005506|GO:0016705
Cma09g00185 517 MobiDBLite consensus disorder prediction 492 517 - -
Cma09g00185 517 PANTHER CYTOCHROME P450 82C3-RELATED 1 454 - -
Cma09g00185 517 PRINTS E-class P450 group I signature 311 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00185 517 PRINTS E-class P450 group I signature 26 47 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00185 517 PRINTS E-class P450 group I signature 128 146 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00185 517 PRINTS E-class P450 group I signature 390 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00185 517 PRINTS E-class P450 group I signature 400 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00185 517 PRINTS E-class P450 group I signature 352 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00185 517 PRINTS E-class P450 group I signature 2 21 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00185 517 PRINTS E-class P450 group I signature 268 294 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00185 - - - cmax:111476389 914.064
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00185 Cma-Chr9:775094 Cma09g00188 Cma-Chr9:783152 0 dispersed
Cma09g00183 Cma-Chr9:770192 Cma09g00185 Cma-Chr9:775094 0 proximal
Cma09g00185 Cma-Chr9:775094 Cma09g00186 Cma-Chr9:778159 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g854 . . Bda01g00557 . . . . . . . . Cma09g00185 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01620 Csa03g04164 Chy04g00550 . . . . . . . . . . Cmo01g01942 . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00651
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00185 Cma_Chr09 FPKM 1.041506 0.932227 0.435765 0.510475 0.737692 0.412658 0.858579 0.0 0.0 0.0