Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00189 ATGGAACACCTTTACGCCCTCGCCGGAATAATCTTCCCCTTTCTTTTCTTTGTCTATGTTCTCTTCACTTCGTCCCGGAGATCTGTCGCTCATCGGAAGAGGATCCCACCGGAGGCCGGTGGTGCTTGGCCGGTGATTGGCCACCTCCATCTGCTCCATGCAGGAGACCCAACTCACATAGCGTTGGCCAAAATGGCAGATGCCTATGGGCCCATGTTTACGTTAAGGTTCGGTATGAAAAAGGCCTTGGTTGTCAGCAGTTGGGAAATAGCAAAGGAGTTTCTTACTACAAACGACAGAATCTTCGCCTCTCGTCCAAAGCTTGTGGCCTCAAAGCTTCTTGCCTATGATTATGCAATGATGGGGTTCAGCCCATACACTCCACACTGGCGCCAAGTGCGCAAAATAGCCACGCTCGAGCTCCTCACTAACCACCGCCTGGAGCAGCTCCAACACATCAGAGTATTTGAGGTACAGCGGTGGATGAAAGAGCTACACAAAATGAGTATTAGAAGCAATGAAAGAGGTGATAAAGTGGCGGTGGAAATGAAGAAGTGGTTGGCAGACATAACCCTGAATACCATATTCAAGATGGTGATTGGAAAGAGATTCTCCGCCATCCAACATGGTACTGAAAACTTCCCCAAGGCGTTGATAGATTTCTTTGGATTGTTCCATATATTCGTTCCTTCGGATTCGTTTCCGTTTCTGAGTTGGTTGGACTTGGGAGGACATGAGAAGACAATGAAGAAGACAGCCAAAGTAATAGATGAGGCTTTTCATAAATTCCTCCAACAACATCGGGAGAGAAGAAACGAGGGCCAAGCGGAGACGGCGGAGCAGGACTTCATGGATGTGATGATTTCTAGAGTTGAAGAAGATGAACAACACTTCAGCTACGATGCCGATACAGTCATTAAAGCTACATGCTTGAATATGATAGTAGGCGGATTTGACACAACCGCGGTTACCATGACATGGGCTCTTTGTTTACTCCTCAATAATGAAGAAGCCCTCAAGAAGGTCCAACTTGAATTAGACGAAAAAGTTGGAAGATCAACCCAAGTAAAAGAGTCTGATGTAAAAAATCTACCATATCTCCAAGCTATTGTTAAGGAAACTCTACGGTTGTATCCTGCTGTACCGTTAATGGCCCCTCATGAATCAGTCGAGGATTGCACAGTCGCTGGCTACCACATCTGCAAAGGGACACGTCTCATAGTTAATGTTCAAAAGCTCCAAAAAGACCCACGTGTTTGGGAAGAACCTAATGAATTTTGTCCAGAAAGATTTGTAACTAGCCAAAAGAACTTTGATGTTAGAGGACTAAGTCCACAATTCATACCATTTGGAAATGGACGAAGGATGTGCCCTGCAATCTCCTTTGCGCTTCAAGTAATGCATATCACACTTGCAAACTTTCTACATGGGTTTGAAATTGAGAGGCCATCAGAAGAACTCCTCGACATGGAAGAGGGTATGGGATTGACCAGCCTTAGAAAAGCTCCACTTGAAGTTGTCTTAACTCCACGCTTACCTGCCCATATTTATGAGTCATCTCGCAATCGTATTCTGTAA 1578 45.31 MEHLYALAGIIFPFLFFVYVLFTSSRRSVAHRKRIPPEAGGAWPVIGHLHLLHAGDPTHIALAKMADAYGPMFTLRFGMKKALVVSSWEIAKEFLTTNDRIFASRPKLVASKLLAYDYAMMGFSPYTPHWRQVRKIATLELLTNHRLEQLQHIRVFEVQRWMKELHKMSIRSNERGDKVAVEMKKWLADITLNTIFKMVIGKRFSAIQHGTENFPKALIDFFGLFHIFVPSDSFPFLSWLDLGGHEKTMKKTAKVIDEAFHKFLQQHRERRNEGQAETAEQDFMDVMISRVEEDEQHFSYDADTVIKATCLNMIVGGFDTTAVTMTWALCLLLNNEEALKKVQLELDEKVGRSTQVKESDVKNLPYLQAIVKETLRLYPAVPLMAPHESVEDCTVAGYHICKGTRLIVNVQKLQKDPRVWEEPNEFCPERFVTSQKNFDVRGLSPQFIPFGNGRRMCPAISFALQVMHITLANFLHGFEIERPSEELLDMEEGMGLTSLRKAPLEVVLTPRLPAHIYESSRNRIL 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 786089 788066 - CmaCh09G001890.1 Cma09g00189 300194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00189 525 Pfam Cytochrome P450 39 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 PANTHER CYTOCHROME P450 33 518 - -
Cma09g00189 525 SUPERFAMILY Cytochrome P450 42 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Cma09g00189 525 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 PRINTS E-class P450 group I signature 190 208 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 Gene3D Cytochrome P450 20 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00189 525 PANTHER CYTOCHROME P450 82C3-RELATED 33 518 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00189 - - - csv:101212976 818.535
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01881 Cma09g00189 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01880 Cma-Chr1:12321737 Cma09g00189 Cma-Chr9:786089 0 dispersed
Cma01g01881 Cma-Chr1:12325303 Cma09g00189 Cma-Chr9:786089 0 dispersed
Cma01g01882 Cma-Chr1:12328508 Cma09g00189 Cma-Chr9:786089 8.15E-79 dispersed
Cma09g00189 Cma-Chr9:786089 Cma10g00902 Cma-Chr10:4487419 0 dispersed
Cma09g00188 Cma-Chr9:783152 Cma09g00189 Cma-Chr9:786089 0 tandem
Cma09g00189 Cma-Chr9:786089 Cma09g00190 Cma-Chr9:789512 2.02E-125 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g849 . . . . . . . . . . Cma01g01881 Cma09g00189 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04160 . . . . . . . . . . . Cmo01g01940 Cmo09g00184 . . . . . . Bhi09g02034 . . . . . . Cla05g01984 . . . . . . . . . Cme04g00665
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00189 Cma_Chr09 FPKM 0.133824 0.15739 0.179526 0.090431 15.688588 16.513945 16.405519 6.729708 7.293991 6.986963