Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00190 ATGGAGTTCCAATTACCCTCCTCCATCATCGTGCTTCTTCATTTGTTTTTCATTACTTCCTGTTATTATCTGTGGCGAAAGTGGCAGCAGCACAAATTGGCAGACCGGAAGCAGGCGCCTTCACCGCCGGGAGCCTGGCCCATAATCGGCCACCTCCATCTTCTCCACAATGCAAAGCTCCCCCATCATGCTCTTGGAGCCATGGCCGACAAATATGGGCCCATCTTCAGTCTCCAGCTCGGCTCCCGCTCGGCTCTAGTGGTCAGCAGCTGGGAAATGGCCAAGGAAAGCATGTGCGTTAACGACGCCGCCGCCGCCTCCCGCCCTGGTGTCTCCGGCACAAAATATTTCTCTTACGACTTTGCAGCCTTCGGCTTGGCTCCTTACAGTCCTTACTGGCGCGAGATTCGTAAAGTCACTCACATGGAGCTCCTCTCTAATCCACGCGTTTACAAGGTTGCGAGCACTATGCTCGCTGAGATCAACACATCGCTGACAGAGCTGCACGAAACATGGGGTGCCCAAAAGGATGAATCGGGGCAGGTTGCTGTAGAAATGAAGCGTTGGTTTGGGGATGTGATAGTGAATATGCTTCTTAAGATCATCATCGGGAAACGATGTGTGGGTCCGAACGCCGAGGGCGGTGAAAAGGAAGCCAAAGATATCCAATTGGCAATTAGGGACTCGTTCCATTTGATGGGTCAAGGGTTGTTGCAAGACTATATTCCACTGATCGGACGGCTCGGATTTAATGGGCAGGTGCCGGTGATGGAGAATATAGCCAAACGATTCGACATGGTTCTAAGCCAATGGCTGGAAGAACACAAGCGTAGAAGATCAGCTTCTTCTGGTGAAAAAGACAGAGATTTTATGGACGCTCTCATTTCTTTACATAATGGCAAGGGGATTGAAGGTTACTACGATGGTGATACCATTACCAAGGCCACAACCCTGAATATGATTGCAGGTGGAACTGAAAGCACGACAGTGACTCTAACATGGGCGATGTCGTTGCTACTAAACAATCCACATGTCCTGGAAAAGGCGTGGCAGGAGCTGGACGCGGTGGTCGGGAGAGAGAGGAGGGTGACGGAGGACGACATAAGCAAGCTTGTTTATTTACAAGCCATAATTAAGGAGACGATGCGATTGTACCCTGCAGGGCCTCTGTTGGGGCCTCGTGAGTTCCACAAGGACTGCGTTGTGGGTGGCTACTTTGTTCCCAAAGGCACCCAGTTGATCCCAAACATTTGGAAGATCCAAACCGACCCACGGGTTTGGTGTGAGCCGTTTGAGTTCAAGCCGGAGCGGTTTTTGACGACCCATAAGGATGTTGATTTGAAGGGGAATCATTTTGAGTTGATTCCGTTTGGGAGTGGGCGGAGAGGGTGCCCGGCAGCGGCGTTTGGGCTTCAAATGATGCATTTCACTTTGGCTGGGTTTTTACAGTGCTTTGATGTCAAAAACCCCACTAAGGACCCTATTGATATGTCGGAGAATTTCGGAATGGCCAATGAGAAGTGGGTGAAGAGGGGAGTTTGTGAGCCAAAGAAGGCCCCTTCGCCGCCGGGTGCTTGGCCCATAATTGGCCACCTCCATCTGCTCAACAGTGGGAAGCTCCCCCACCATGTTCTTGGAGCCATGGCCGACAAATATGGCCCGATTTTTCGCCTGCAGCTCGGCTCTCGCTCTGCTCTGGTCGTCAGCAATTGGGAAATGGCCAAAGAAAGCATGTGCATTAACGACGGCGCCGCTGCATCTCGCCCAGAACTCTCGGTCTCCAAGAACTTCTCTTACCACTTCGCCATGTTTGGGTTGGCTTCTTACGGCACTTACTGGCGCGATATGCGTAAAATAACCCACTTGCAACTCCTCTCCAACCCACGTGTCGATCAGGTTAAGAGCATGATGCTTAGTGAGATGGCCACATCAGTTACAGAGTTGCACGCAAGATGGGCTTCTGAGAAGAACCAATTGGGACACATTAAGGTGGAGATGAAGCGTTGGTTTGGCGATGTGACAGTGAATATGCTTCTTAAGGTCATCATAGGTAAACGATGCGTAGGTCCAAACGCCAAGGGAGATGAAAAAGAAGCAATAGATTTGCAAATGGCAATTAGGAAGTCTTTTCATTTGATGGGTGAAGGGTTACTGAGAGATTACATTCCTATTCTTGCAAATATGGGATTTGATAGACATGTTAAGGCAATGGAGAAAATAGCCAAACGAATCGACTCCATTCTTCAGTGTTGGCTCGAAGAACACCGCCGGAATGGAGATAAAAACCAGAGTTTGGATACTAAAGATGGAGACTTCATGGATTCTTTGCTTTCGTTATGTCGCGCCAACGAGCTTCCGAGTCACTTCGACCACGATACAATTGTCAAAGCCACAACACTGGCTTATGAAGAGCTTGACCAAGTGGTGGGAAGAGACAGGCGAGTGAAGGAGAGCGACATAACCAAGTTGGTTTATTTACAAGCCGTAGTCAAAGAGACAATGCGACTGTACCCAGCAGGGCCTCTGTTGGGTCCTCGTGAGTTCTACAAGGACTGCTTTGTGGCTGGCTATTTTGTTCCCAAAGGCACCCAATTGATCCCAAACATTTGGAAGATCCAAACCGATCCACGCGTCTGGGCAGACCCATTTGAGTTCAAGCCGGAGAGGTTTTTGACGACCCATTGCGATGTGGATTTGAAAGGGAATAATTTCGAGTTGATTCCGTTTGGGAGTGGGCGAAGAGGGTGCCCCGCAGTTGCGTTTGGGCTTCAAATGGTGCATTTCGCTTTGGCTGGCTTTTTACATTCCTTTACCGTCAAAACCCCGACGCCCCAACCGGTTGATATGGCGGAGAATTTCGGTATGGCCAATGAGAAAGTGGTTCCTCTTAATGTTTTGGTCACCCCGCGCTTACCTTCGCATCTTCACGGCCCAATAATGTAG 2943 49.85 MEFQLPSSIIVLLHLFFITSCYYLWRKWQQHKLADRKQAPSPPGAWPIIGHLHLLHNAKLPHHALGAMADKYGPIFSLQLGSRSALVVSSWEMAKESMCVNDAAAASRPGVSGTKYFSYDFAAFGLAPYSPYWREIRKVTHMELLSNPRVYKVASTMLAEINTSLTELHETWGAQKDESGQVAVEMKRWFGDVIVNMLLKIIIGKRCVGPNAEGGEKEAKDIQLAIRDSFHLMGQGLLQDYIPLIGRLGFNGQVPVMENIAKRFDMVLSQWLEEHKRRRSASSGEKDRDFMDALISLHNGKGIEGYYDGDTITKATTLNMIAGGTESTTVTLTWAMSLLLNNPHVLEKAWQELDAVVGRERRVTEDDISKLVYLQAIIKETMRLYPAGPLLGPREFHKDCVVGGYFVPKGTQLIPNIWKIQTDPRVWCEPFEFKPERFLTTHKDVDLKGNHFELIPFGSGRRGCPAAAFGLQMMHFTLAGFLQCFDVKNPTKDPIDMSENFGMANEKWVKRGVCEPKKAPSPPGAWPIIGHLHLLNSGKLPHHVLGAMADKYGPIFRLQLGSRSALVVSNWEMAKESMCINDGAAASRPELSVSKNFSYHFAMFGLASYGTYWRDMRKITHLQLLSNPRVDQVKSMMLSEMATSVTELHARWASEKNQLGHIKVEMKRWFGDVTVNMLLKVIIGKRCVGPNAKGDEKEAIDLQMAIRKSFHLMGEGLLRDYIPILANMGFDRHVKAMEKIAKRIDSILQCWLEEHRRNGDKNQSLDTKDGDFMDSLLSLCRANELPSHFDHDTIVKATTLAYEELDQVVGRDRRVKESDITKLVYLQAVVKETMRLYPAGPLLGPREFYKDCFVAGYFVPKGTQLIPNIWKIQTDPRVWADPFEFKPERFLTTHCDVDLKGNNFELIPFGSGRRGCPAVAFGLQMVHFALAGFLHSFTVKTPTPQPVDMAENFGMANEKVVPLNVLVTPRLPSHLHGPIM 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 789512 794801 - CmaCh09G001900.1 Cma09g00190 300195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00190 980 Pfam Cytochrome P450 40 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 Pfam Cytochrome P450 801 955 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 Pfam Cytochrome P450 520 798 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 SUPERFAMILY Cytochrome P450 520 970 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506|GO:0016705
Cma09g00190 980 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 PANTHER CYTOCHROME P450 82A2 802 974 - -
Cma09g00190 980 PANTHER CYTOCHROME P450 82A2 515 801 - -
Cma09g00190 980 SUPERFAMILY Cytochrome P450 40 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 Gene3D Cytochrome P450 799 968 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 Gene3D Cytochrome P450 515 798 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 Gene3D Cytochrome P450 29 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 PRINTS E-class P450 group I signature 827 845 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 PRINTS E-class P450 group I signature 868 892 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 PRINTS E-class P450 group I signature 916 939 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 PRINTS E-class P450 group I signature 906 916 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00190 980 PANTHER CYTOCHROME P450 82C3-RELATED 515 801 - -
Cma09g00190 980 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 909 918 IPR017972 GO:0005506|GO:0016705
Cma09g00190 980 PANTHER CYTOCHROME P450 82A2 8 507 - -
Cma09g00190 980 PANTHER CYTOCHROME P450 82C3-RELATED 802 974 - -
Cma09g00190 980 PANTHER CYTOCHROME P450 82C3-RELATED 8 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00190 - - - csv:101213457 882.093
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00190 Cma-Chr9:789512 Cma03g00951 Cma-Chr3:6785337 8.05E-73 dispersed
Cma09g00189 Cma-Chr9:786089 Cma09g00190 Cma-Chr9:789512 2.02E-125 tandem
Cma09g00190 Cma-Chr9:789512 Cma09g00191 Cma-Chr9:797484 9.42E-123 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g847 . Blo12g00929 . Bda03g00235 . Bpe04g00199 Bma04g00187 . . . . Cma09g00190 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01612 Csa03g04159 Chy04g00558 . . . . . . . . . . Cmo01g01939 Cmo09g00185 . . . . . . Bhi09g02032 . . . . . . Cla05g01986 . . . . . . . . . Cme04g00667
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00190 Cma_Chr09 FPKM 0.391098 0.0 1.046198 1.23192 8.735199 9.091788 7.84499 0.25082 0.19463 0.171302