Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00192 ATGGCAGATCAGATTTCCCCATATCTCAACAGCACTGTAGCTGGACTACTCTTCCTCTTGCTTCTCTTCTCATATTTTGTTCTCAAGAAGGCTACATCCCGTAACCGCCCATCACAGCCTCCTGAAGTAGCCGGCGGATGGCCCATAATCGGCCATCTACGACTCCTCAAGTGCTACACCACCCTCGATTCAATCGTGTCTTCGCGACCCAAAATTATATTACAGAAGAAACTGGGATACAACTTCGCCGGTTTTGGGTTCAGGCCCCACGCCGATTCCTTTTACCGGAACATGCGTAAGATCGTAGCCTCCGAGACGCTTTCCAACCGCCGTCTGGAGTTACAGAGAGATATTAGAGTTTCTGAGGTGAAAAGATCGGTGAAGGAGGTTTACAATTTATGGGCGAAAACAAGGGAAGCCTCATCAGACTCCTATTTAGTTCTTGATTTGGACGAGTGGGTTGGGAATATGGCTTTGAATGTGATTCTGATGATGGTTTGTGGAAAGCGATTCGATGGCGGTTCTTGCGGCGACGAGAGGGAGATGGAACGATGTCGTAAAGCGATGAGGGGTTTTTTTGATTTGGGGGGGAAGTTTATAGTGGGAGATGCCATTCCTTTTTTGAAATGGCTGGATTTGGGTGGATATCAAAAGGCGACGAACAAAGTATGGAAAGAATTGGACTGTCTTATGGAGGAATGGCTGGAAGAACATCGCCGGAAGAAGAGGGACTGCAGCGACGCCGACGGGCAGCACGACCTCATGGCTGTGATGCCGTCTCTTCTGGAAGGCTTGGACCTTGCTGGATATGATGCTGATACTGTCAACAAAGCTACTTGCTTGACGCTTATTTCTGGGGGAACTGATACGATGGCGGTAACTCTAACATGGGCGATCTCGTTATTACTGAACAACCAAGAGGCATTGAGAAAAGTAGAGGAGGAGCTAGACATCCACGTTGGGAAGGAAAGGGTAGTGGATGAATCAGACATAAGCAAGCTGGTGTATCTCCAAGCCGTAATCAAAGAGACATTAAGGTTGTACCCAGCAGGCCCACTGTCGGGGGCGCGAGAGGTAAGCCAGGACTGCACAATTGGAGGCTACAACGTCGCGGCAGGCACGTACCTCATCACAAACATTTGGAAGATACAGAGGGACCCTCGAATTTGGCAAGAGCCTTCGGAGTTCAAGCCTGAGAGGTTTCTAAGCAGCCACAAGCACATGGATGTGAAGGGCCAGCACTTTGAACTGTCTCCCTTTGGGTATGGAAGAAGGGCCTGTCCTGGGCAGGGAATTAGCCTTCTAATGACGCCCTTGGTGCTAGCCAGTTTGATTCATTCATTCCAACTTAGAACTGGTTGTGATGAAGCGGTGGACATGACTGCCAACCTTGGGCTCACCATGCACAGAGTCAACCCTCTTCAAGTTCTCGTCAAGCCACGCCTCCTACCTACTGCTTACGCGTAA 1467 49.56 MADQISPYLNSTVAGLLFLLLLFSYFVLKKATSRNRPSQPPEVAGGWPIIGHLRLLKCYTTLDSIVSSRPKIILQKKLGYNFAGFGFRPHADSFYRNMRKIVASETLSNRRLELQRDIRVSEVKRSVKEVYNLWAKTREASSDSYLVLDLDEWVGNMALNVILMMVCGKRFDGGSCGDEREMERCRKAMRGFFDLGGKFIVGDAIPFLKWLDLGGYQKATNKVWKELDCLMEEWLEEHRRKKRDCSDADGQHDLMAVMPSLLEGLDLAGYDADTVNKATCLTLISGGTDTMAVTLTWAISLLLNNQEALRKVEEELDIHVGKERVVDESDISKLVYLQAVIKETLRLYPAGPLSGAREVSQDCTIGGYNVAAGTYLITNIWKIQRDPRIWQEPSEFKPERFLSSHKHMDVKGQHFELSPFGYGRRACPGQGISLLMTPLVLASLIHSFQLRTGCDEAVDMTANLGLTMHRVNPLQVLVKPRLLPTAYA 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 799666 806537 - CmaCh09G001920.1 Cma09g00192 300197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00192 488 Gene3D Cytochrome P450 29 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00192 488 PANTHER CYTOCHROME P450 82C3-RELATED 14 57 - -
Cma09g00192 488 PANTHER CYTOCHROME P450 82C3-RELATED 57 487 - -
Cma09g00192 488 PANTHER CYTOCHROME P450 FAMILY PROTEIN 14 57 - -
Cma09g00192 488 PANTHER CYTOCHROME P450 FAMILY PROTEIN 57 487 - -
Cma09g00192 488 SUPERFAMILY Cytochrome P450 46 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00192 488 Pfam Cytochrome P450 66 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00192 488 PRINTS E-class P450 group I signature 295 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00192 488 PRINTS E-class P450 group I signature 275 292 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00192 488 PRINTS E-class P450 group I signature 157 175 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00192 488 PRINTS E-class P450 group I signature 338 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00192 488 PRINTS E-class P450 group I signature 379 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00192 488 PRINTS E-class P450 group I signature 417 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00192 488 PRINTS E-class P450 group I signature 427 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00192 488 PRINTS P450 superfamily signature 339 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00192 488 PRINTS P450 superfamily signature 418 427 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00192 488 PRINTS P450 superfamily signature 286 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00192 488 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 420 429 IPR017972 GO:0005506|GO:0016705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00192 - - - csv:101213692 677.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00192 Cma-Chr9:799666 Cma01g01881 Cma-Chr1:12325303 1.10E-143 dispersed
Cma09g00191 Cma-Chr9:797484 Cma09g00192 Cma-Chr9:799666 0 tandem
Cma09g00192 Cma-Chr9:799666 Cma09g00193 Cma-Chr9:807064 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g843 . . . Bda03g00233 . Bpe04g00198 Bma04g00186 . . . . Cma09g00192 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01609 Csa03g04156 Chy04g00560 . . . . . . . . . . Cmo01g01938 Cmo09g00188 . . . . . . Bhi09g02030 . . . . . . Cla05g01988 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00192 Cma_Chr09 FPKM 0.0 0.0 0.792171 0.332608 0.535825 0.394539 0.672268 0.0 0.0 0.0