Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00193 ATGGAACTTACCGGAATATCCATCGGAATCATTCCCCCATATCTCAACACCTTTGTAGCTGCTCTCTTCCTCTTCCTTCTCTCCTCATTCTTTGTTTTCAAGAAGGCTACAGCCCCTAAACGCAGAGAACCCCCTGAAGTAGCCGGTGGATGGCCGATAATCGGCCATCTGCCACTTCTCAAAGCCGATTCCCAACTCCCTCATCAAACCTTGGGAGCCCTGGCTGACAAATATGGACCTATATTCCGCATTCGAGTCGGTGCCCAACCAACTCTCATTATTAGCAGTTCGGAATTAGCCAGAGAGTGCCACTCCACCCTTGATTCAATCGTCTGCTCCCGCCCCAAAAGTGTGGGAGGAAAGCTGTTGGGCTACAACTACGCGGCTTTTGGGGCCAGGCCGTACGATTCCTTTTATCGCAGTATGCGTAAAATCGTTGTCTCCGAGGTACTTTCGAATCGTTGCCTGGACTTACGGAGGGATATTAGAGTGTCAGAGGTGAAGAAATCGTTGAAGGAGCTTTACGATCAGTGGACAAACAGAGAGGAAGGCTCTGACCACATACTCGTTGATATTGAACAATGGATTGGGAATATTAACTTGAAAGTGGTTCTGATGATGGTTTGTGGGAAGCGGTTCCTTGGGGGTTCTGCTGACGATGAGGAGATGAAACGGTGTCGTAAAATCATGAGAGATTTCTTGGATTTGATGGGGAAATTTCTGGTGGGAGATAGCATTCCTTTCCTGAGATGGCTGGATTTGGGTGGATATGAAAAGGCCATGAAGATAAGTTCAAAGCAATTGGACTCTCTTTTGGAGGAATGGCTTGAAGAACACCGTCGGAAGCGAACCGATCACAATGACTTGATGGATGTGATGCTTTCTAATCTTGAAGCGATGGATCTTGCAGGCTACGACGCCGACACAGTCAACAAAGCCACTTGTTTGAGCATTATCACTGGGGGAACCGATACTGTAACGGTGACCTTGTCATGGGCCATCTCGTTGTTGCTGAACAATAGAGAAGCGTTGAGAAAGACCCAAGAAGAGCTGGACATCCATGTCGGAAAGGACCGGCTAGTAGATGAATCGGACATAAGCAAGCTGGTGTATCTCCAAGCCGTGGTGAATGAGACATTAAGGCTGTACCCACCGGGACCGCTGTCGGGTGTTCGAGTGTTCAGTGAGGACTGCACGGTGGGAGGCTACGACGTAGTGGCCGGCACGCACCTCATTACGGATCTTTGGAAGATACAGACGAACCCTCAGGTGTGGGCAGAGCCTTTGGAGTTCAAGCCTGAGAGGTTCGTTAGCGGAGAGAAGCAGTTGGATGTGAAGGGGCAGAACTTTGAATTTGCCCCGTTTGGCTTAGGAAGAAGAGCCTGCCCTGGAAGGAGCCTTGGGATTCAGATGACGCAGTTGGTGTTGGCGAGCCTGATTCATTCGCTGGAACTTGGAACTGGGTCCGATGAACCAGTAGACATGACTGCTGGGTTTGGACTCACAATGTACAGAGCTAAACCTCTCCAAATTCTCGTCAAACCGCGTCTCCTTGCTTGTGCTTATACATGA 1572 49.43 MELTGISIGIIPPYLNTFVAALFLFLLSSFFVFKKATAPKRREPPEVAGGWPIIGHLPLLKADSQLPHQTLGALADKYGPIFRIRVGAQPTLIISSSELARECHSTLDSIVCSRPKSVGGKLLGYNYAAFGARPYDSFYRSMRKIVVSEVLSNRCLDLRRDIRVSEVKKSLKELYDQWTNREEGSDHILVDIEQWIGNINLKVVLMMVCGKRFLGGSADDEEMKRCRKIMRDFLDLMGKFLVGDSIPFLRWLDLGGYEKAMKISSKQLDSLLEEWLEEHRRKRTDHNDLMDVMLSNLEAMDLAGYDADTVNKATCLSIITGGTDTVTVTLSWAISLLLNNREALRKTQEELDIHVGKDRLVDESDISKLVYLQAVVNETLRLYPPGPLSGVRVFSEDCTVGGYDVVAGTHLITDLWKIQTNPQVWAEPLEFKPERFVSGEKQLDVKGQNFEFAPFGLGRRACPGRSLGIQMTQLVLASLIHSLELGTGSDEPVDMTAGFGLTMYRAKPLQILVKPRLLACAYT 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 807064 808958 - CmaCh09G001930.1 Cma09g00193 300198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00193 523 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00193 523 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00193 523 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00193 523 PANTHER CYTOCHROME P450 FAMILY PROTEIN 19 522 - -
Cma09g00193 523 PANTHER CYTOCHROME P450 82C3-RELATED 19 522 - -
Cma09g00193 523 Pfam Cytochrome P450 48 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00193 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Cma09g00193 523 PRINTS E-class P450 group I signature 75 94 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00193 523 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00193 523 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00193 523 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00193 523 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00193 523 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00193 523 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00193 523 SUPERFAMILY Cytochrome P450 49 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00193 523 Gene3D Cytochrome P450 30 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00193 - - - cmax:111476968 1031.17
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01879 Cma09g00193 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00191 Cma-Chr9:797484 Cma09g00193 Cma-Chr9:807064 0 dispersed
Cma09g00193 Cma-Chr9:807064 Cma01g01881 Cma-Chr1:12325303 2.04E-163 dispersed
Cma09g00192 Cma-Chr9:799666 Cma09g00193 Cma-Chr9:807064 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g842 . Blo12g00935 . . . . . . . . Cma01g01879 Cma09g00193 . . . . . . . . . . . . . . . . . . . . Cone7ag1411 . . . . Chy04g00562 . . . . . . . . . . . Cmo09g00189 . . . . . . . . . . . . . Cla05g01989 . . . . . . . . . Cme04g00671
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00193 Cma_Chr09 FPKM 4.880309 4.213838 9.072604 8.593206 24.764471 26.198286 21.44313 0.118161 0.166896 0.140262