Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00194 ATGAACACGCCACCTTCCTTGCCGGACCTCTCCTTGCAGATCAGCCTCCCAATGTCAACGAAGCCCAACCCACCAAGCTCATGCTCAACCACCACGCATTCTGGTTGCAGTGCAAAAAGTGATTTGAGCCACAAAAATAATCTGTTCCGCTTAGGGTTTGAAGTGGGAGATATGGGTCTTCTACAGCGTCATCATCAAGCATGTAATGTCCGTTGCCGCCGCGACTTCAAAACAAGTGTCGGTGATGTTGCGTATGGAGTAAAAAGAATCCCCCGCGCTCCCAGAATGAGATGGACTACAACTCTACACGCTCATTTTATACACGCCGTCGAGCTTCTTGGCGGCCATGAAAGAGCTACACCAAAATCTGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTGCAGATGTACAGAACAGTGAAGAACACTATCAAGGGAACAGATGATTCTGGAAGGCCTGAGCTTGAACCAGATGCTGTTGTTTTATCTTCTTCTTCTTCTTCTTCGTCGTTGGCGTCTGCTCAAAACTCGAACTTTCAATGGCGTCATTTGCAGAGAATCCAAAGAAGTAGTTTGGTAACGTCAATGCACGAGAGTTGTGACAGGACCAAGTCAAACGGCGACGTTTTCGCTAAATCCAGAGGAATTAAGGTGGAAGGAAGCAACGGACATTATGAGAAGGCAATTGCCATGCAGCGGATTAATTTAGAGTTCACTCTTGGAAGCCCAAGTTGGCAATTGGATTATGGCGATGCAAATGAGCTTGCTCTTCTCAATTGCTAA 807 46.22 MNTPPSLPDLSLQISLPMSTKPNPPSSCSTTTHSGCSAKSDLSHKNNLFRLGFEVGDMGLLQRHHQACNVRCRRDFKTSVGDVAYGVKRIPRAPRMRWTTTLHAHFIHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTIKGTDDSGRPELEPDAVVLSSSSSSSSLASAQNSNFQWRHLQRIQRSSLVTSMHESCDRTKSNGDVFAKSRGIKVEGSNGHYEKAIAMQRINLEFTLGSPSWQLDYGDANELALLNC 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 809303 811068 - CmaCh09G001940.1 Cma09g00194 300199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00194 268 Pfam Myb-like DNA-binding domain 95 146 IPR001005 -
Cma09g00194 268 SUPERFAMILY Homeodomain-like 91 148 IPR009057 -
Cma09g00194 268 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 5 260 - -
Cma09g00194 268 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 94 147 IPR006447 GO:0003677
Cma09g00194 268 Gene3D - 93 150 - -
Cma09g00194 268 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 260 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00213 Cma09g00194 CCT
Cma09g00194 Cma12g00506 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00194 Cma-Chr9:809303 Cma01g01879 Cma-Chr1:12314351 1.30E-63 dispersed
Cma12g00506 Cma-Chr12:2616517 Cma09g00194 Cma-Chr9:809303 6.03E-41 wgd
Cma05g00213 Cma-Chr5:902076 Cma09g00194 Cma-Chr9:809303 1.90E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35585 PF00249 Myb_DNA-binding 8.70E-06 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00194 - - bhj:120084780 369.007