Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00213 ATGCAAAGCAACGGTTCTGATTCGCAGCCGCAAGAACCAAATCAGCGGCACCAGCAGCCGCAGTCGTGGATGTCAATGCAGTACCCGCCGCCGGCTATGGTAATGCCGCACCATATGATGACGCCTCCGCATTACATGGCGCCGCCGCTTCCGCCGCCACCGTATATGCATTATCACCCCCAATATCAGCATCACCATCTCCCTATTCAGCATTCGCAGCCGCTACAGGGATCTGGCGGCGAAAACAAAACGATTTGGGTGGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCCATACCTGCTTTGCTTCCATTGGCGAGATTTCATTGATCAAGATCATTCGTAATAAGCAAAGTGGTTTGTCTGAGGGGTATGGATTTGTAGAATTTTTTGCTCATGCAACAGCTGAAAAAGCTCTTCAGAACTATGCTGGAGTGCTCATGCCAAGTACAGAGCAGCCTTTCCGCTTGAATTGGGCGACATTTAGCACCGGTGACAAGCGATCAGATAATGATCCCGATCTTTCTATTTTTGTTGGTGACTTAGCTGCGGATGTTACTGATGCTCTGTTGTACGATACATTTTCAAGTAAATTTCCTTCTGTTAAAGCAGCAAAAGTTGTCATTGATGCCAATACTGGTCGTTCAAAGGGTTATGGTTTTGTGCGGTTTGGAGATGACAATGAAAGGTCTCAGGCCATGTCTGAAATGAATGGTGTATATTGCTCGAGCAGACCTATGCGCATTGGTGCAGCAACGCCCAGAAAGTCTTCTGGATATCAGCAACAGAATTTTTCACAGGGAGAGTATTTAACAAATGGTCCCTTGAGCCAAGGACTCCAATCTGAAGGAGATTCTGCAAATACAACTATATTTGTTGGAGGGCTTGATCCTAATGTCACCGATGAAGATCTGAGGCAACCTTTCTCACAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTTGGTAAAGGATGTGGGTTTGTTCAATTTGCCAATAGAAATGATGCTGAAGAGGCCTTGCAGAAACTAAATGCAACTGTAATTGGCAAGCAAACTATTCGTCTTTCTTGGGGCCGAAATCCAGCAAATAAGCAGGCAAATTACCCTTTTCTCCTAGTGTGGCAGTTCAGAGATTTTGGTAACCAGTGGAATGGACCTTACTACGGGGGGCACATATATGATGGCTATGGATATGGTCTGCCACCTCACGATCCAAGTATGTATCACGCAGCTTATGGAGCTTACACTGTATATGGAAGCCATCAACAACAAGTAATCTGA 1287 45.61 MQSNGSDSQPQEPNQRHQQPQSWMSMQYPPPAMVMPHHMMTPPHYMAPPLPPPPYMHYHPQYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISLIKIIRNKQSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLSIFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSEMNGVYCSSRPMRIGAATPRKSSGYQQQNFSQGEYLTNGPLSQGLQSEGDSANTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNATVIGKQTIRLSWGRNPANKQANYPFLLVWQFRDFGNQWNGPYYGGHIYDGYGYGLPPHDPSMYHAAYGAYTVYGSHQQQVI 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 904988 908513 - CmaCh09G002130.1 Cma09g00213 300218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00213 428 CDD RRM2_SECp43_like 175 254 - -
Cma09g00213 428 Gene3D - 277 369 IPR012677 -
Cma09g00213 428 SUPERFAMILY RNA-binding domain, RBD 47 165 IPR035979 GO:0003676
Cma09g00213 428 CDD RRM3_NGR1_NAM8_like 289 360 - -
Cma09g00213 428 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 16 426 - -
Cma09g00213 428 CDD RRM1_SECp43_like 84 164 - -
Cma09g00213 428 Gene3D - 163 273 IPR012677 -
Cma09g00213 428 Gene3D - 82 162 IPR012677 -
Cma09g00213 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 362 IPR000504 GO:0003723
Cma09g00213 428 SUPERFAMILY RNA-binding domain, RBD 160 269 IPR035979 GO:0003676
Cma09g00213 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 16 426 - -
Cma09g00213 428 SUPERFAMILY RNA-binding domain, RBD 278 392 IPR035979 GO:0003676
Cma09g00213 428 SMART rrm1_1 84 159 IPR000504 GO:0003723
Cma09g00213 428 SMART rrm1_1 177 251 IPR000504 GO:0003723
Cma09g00213 428 SMART rrm1_1 291 358 IPR000504 GO:0003723
Cma09g00213 428 MobiDBLite consensus disorder prediction 1 26 - -
Cma09g00213 428 MobiDBLite consensus disorder prediction 1 27 - -
Cma09g00213 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 163 IPR000504 GO:0003723
Cma09g00213 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 147 IPR000504 GO:0003723
Cma09g00213 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 247 IPR000504 GO:0003723
Cma09g00213 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 356 IPR000504 GO:0003723
Cma09g00213 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 255 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00213 - - - csv:101211504 680.248
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma09g00213 Cma12g00518 CCT
Cma09g00213 Cma12g00518 ECH
Cma01g01860 Cma09g00213 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00443 Cma-Chr2:2254923 Cma09g00213 Cma-Chr9:904988 3.03E-163 dispersed
Cma02g01540 Cma-Chr2:8748424 Cma09g00213 Cma-Chr9:904988 9.92E-139 dispersed
Cma09g00213 Cma-Chr9:904988 Cma20g00892 Cma-Chr20:4287687 7.28E-154 dispersed
Cma11g01447 Cma-Chr11:9530335 Cma09g00213 Cma-Chr9:904988 4.98E-06 dispersed
Cma14g00665 Cma-Chr14:3336985 Cma09g00213 Cma-Chr9:904988 3.98E-07 dispersed
Cma14g01201 Cma-Chr14:9598250 Cma09g00213 Cma-Chr9:904988 9.63E-13 dispersed
Cma17g00673 Cma-Chr17:5623482 Cma09g00213 Cma-Chr9:904988 1.94E-09 dispersed
Cma01g01860 Cma-Chr1:12230755 Cma09g00213 Cma-Chr9:904988 0 wgd
Cma12g00518 Cma-Chr12:2676295 Cma09g00213 Cma-Chr9:904988 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00213 Cma_Chr09 FPKM 10.06705 11.676912 5.732035 8.209947 28.611536 27.647516 29.295212 6.840398 7.776877 7.180434