Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00218 ATGGAATTTTTGCAGGGTGCCGGGATCCGCGTTTCTCGATCGATGAAACTTGGGAGTTGCATATTTTCTTCGGAAGGCTGTTTTGCAATTTGGAGGACGCGAAACACAATGTCCACGAGGAGTGAACATCATACAGTCCCGCTGTCCGTGCTCCTGAAGCGTGAATTGGCGATTGAGAAGATTGAGAGACCGGAAATCGTACATGGTCAGGCGAGTCAGAGTAAGAAAGGGGAGGATTTTACATTACTGAAGTCGGAATGCGAGAGAGTGGTCGGGGATGGAGTCTCTACGTATTCGGTTTTTGGGCTTTTTGATGGACATAATGGATCTGCCGCTGCTATTTATACTAAGGAAAATTTGTTGAACAATGTTTTAGCTGCTATTCCATCAGATCTCAACAGAGACGAATGGGTTGCAGCATTGCCAAGGGCCTTGGTTGCAGGTTTTGTGAAGACGGACAAAGATTTCCAAGAGAAAGCACAAACATCAGGAACCACCGTCACCTTCATGATCATTGAGGGATGGGTTCTCACTGTTGCTTCTGTTGGGGATTCCCGTTGCACGTTAGAATCAGCTGAAGGTGACATCTTCTACTTATCAGCAGATCATAGGCTAGAATGCAACGAAGAAGAGAGAGAACGTATAATTGCTAGTGGCGGTGAGGTGGGCCGGCTGAATACCGGTGGTGGTGCAGAGATTGGTCCATTGAGATGCTGGCCAGGTGGCTTGTGTCTATCACGATCAATTGGTGATATGGATATTGGCGAGTTTATAGTGCCTGTACCCTACGTGAAGCAAGTTAAGCTATCTTCTACTGGTGGTAGGGTTATTATTTCAAGTGATGGTGTTTGGGATGCTTTATCAGCTGAAACTGCCTACGATTGCTGTCGGGGGATGCCGGTAGAAACTGCTGCTGCACAGATTGTTAAAGAAGCAGTACAGTCAAAGGGACTTCGCGATGATACTACATGCATTGTGATTGACATATTACCAAGGGAGAAACCATCTACTGCTTTGCCGCCAACGAAGAAGCAGGGAAAAAGAATGTTTAAATCAATGTTCCGCAAAAAGACTTCTGAATCATCTTCTCATCTTGATAAGGAATATAATGAGCCGGATGTTGTTGAGGAATTATTTGAGGAAGGATCGGCTATGCTGTCAGAAAGGTTAGAGGCGAAGTATCCTATCTGCAACATGTTTAAGCTGTTTGTATGTGCAGTATGCCAAGTTGAGATCCAACCTCGGGAGGGTGTCTCCATATATGCCGGCTCATCTAGCAGAGGAAAATTGCGTGCTTGGGATGGACCTTTTCTATGCTTAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGACCTTCTGGAGAGCGTAGCACATGA 1383 45.7 MEFLQGAGIRVSRSMKLGSCIFSSEGCFAIWRTRNTMSTRSEHHTVPLSVLLKRELAIEKIERPEIVHGQASQSKKGEDFTLLKSECERVVGDGVSTYSVFGLFDGHNGSAAAIYTKENLLNNVLAAIPSDLNRDEWVAALPRALVAGFVKTDKDFQEKAQTSGTTVTFMIIEGWVLTVASVGDSRCTLESAEGDIFYLSADHRLECNEEERERIIASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDIGEFIVPVPYVKQVKLSSTGGRVIISSDGVWDALSAETAYDCCRGMPVETAAAQIVKEAVQSKGLRDDTTCIVIDILPREKPSTALPPTKKQGKRMFKSMFRKKTSESSSHLDKEYNEPDVVEELFEEGSAMLSERLEAKYPICNMFKLFVCAVCQVEIQPREGVSIYAGSSSRGKLRAWDGPFLCLSCQEKKEAMEGKRPSGERST 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 936800 941895 + CmaCh09G002180.1 Cma09g00218 300223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00218 460 Gene3D - 67 337 IPR036457 -
Cma09g00218 460 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 38 458 - -
Cma09g00218 460 SMART PP2C_SIG_2 90 329 IPR001932 -
Cma09g00218 460 SMART PP2C_4 53 327 IPR001932 -
Cma09g00218 460 Pfam Protein phosphatase 2C 86 314 IPR001932 -
Cma09g00218 460 PANTHER ALPHABET, ISOFORM E-RELATED 38 458 - -
Cma09g00218 460 CDD PP2Cc 75 329 IPR001932 -
Cma09g00218 460 ProSiteProfiles PPM-type phosphatase domain profile. 67 329 IPR001932 -
Cma09g00218 460 SUPERFAMILY PP2C-like 74 329 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01849 Cma09g00218 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00218 Cma-Chr9:936800 Cma18g01003 Cma-Chr18:8424972 0 dispersed
Cma01g01849 Cma-Chr1:12199846 Cma09g00218 Cma-Chr9:936800 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00218 - - bhj:120085570 812.372