Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00235 ATGGAAAATGATGATCTGAAATCGGAGGATCAGATGGAGATTATGATGATGATGCAACAAATGGAGAAAATCCCTGAATTTTACAATCATCTCTCACCGCCGTCTGATCATTTCAGCTCAAGCACCACCGACCCACATTGCCTGGAAACCCTTCAACAAGCCGCAGAGTCCTCGTCGCCTCCATTCACCAACAACCTACCTTATAATTTGCCTCAAACTGTTCCATTCCCCACCAGTTCACGGTGGCGAAACTCTGGCGGTGAAACGGACTTGCAGAAACAGAGGTCGGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCAGATAGACCCAGAAGCGGTGAAGCCACCGAAGAGGAGGAACGTCAAGATTTCAACTGACCCACAAAGCGTAGCGGCTCGACATAGAAGAGAGAGAATTAGCGAGAGAATTAGGATACTCCAAAGATTGGTCCCTGGAGGTACCAAAATGGATACCGCTTCTATGTTGGATGAGGCTATACATTACGTAAAATTCTTGAAGACCCAAGTGCAATCCCTCGAAAGAGCCGCCACCAACAGGCCACTCCCTGATGCTGCTGCACCAGCATCTGGCGTAGGGTTTCCTCTGGAAATGTCAAGTGGCAGCTATGTCCCCATGGCCAAACCATCCCAAATGACTCACAACCTTGAGCAGTACGGAGATGCTTAA 708 48.73 MENDDLKSEDQMEIMMMMQQMEKIPEFYNHLSPPSDHFSSSTTDPHCLETLQQAAESSSPPFTNNLPYNLPQTVPFPTSSRWRNSGGETDLQKQRSVAAMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAPASGVGFPLEMSSGSYVPMAKPSQMTHNLEQYGDA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1010148 1010855 - CmaCh09G002350.1 Cma09g00235 300240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00235 235 Gene3D - 133 195 IPR036638 GO:0046983
Cma09g00235 235 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 227 - -
Cma09g00235 235 Pfam Helix-loop-helix DNA-binding domain 140 179 IPR011598 GO:0046983
Cma09g00235 235 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 227 IPR045843 GO:0003700|GO:0006355
Cma09g00235 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 188 IPR036638 GO:0046983
Cma09g00235 235 SMART finulus 136 185 IPR011598 GO:0046983
Cma09g00235 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00179 Cma09g00235 CCT
Cma05g00179 Cma09g00235 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00796 Cma-Chr7:3617126 Cma09g00235 Cma-Chr9:1010148 4.86E-40 dispersed
Cma07g01081 Cma-Chr7:5781528 Cma09g00235 Cma-Chr9:1010148 1.57E-19 dispersed
Cma08g00752 Cma-Chr8:4511709 Cma09g00235 Cma-Chr9:1010148 8.31E-31 dispersed
Cma09g00235 Cma-Chr9:1010148 Cma14g01281 Cma-Chr14:10133846 1.43E-34 dispersed
Cma05g00179 Cma-Chr5:758601 Cma09g00235 Cma-Chr9:1010148 7.77E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35588 PF00010 HLH 1.50E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00235 - - bhj:120087062 307.375