Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00235 | ATGGAAAATGATGATCTGAAATCGGAGGATCAGATGGAGATTATGATGATGATGCAACAAATGGAGAAAATCCCTGAATTTTACAATCATCTCTCACCGCCGTCTGATCATTTCAGCTCAAGCACCACCGACCCACATTGCCTGGAAACCCTTCAACAAGCCGCAGAGTCCTCGTCGCCTCCATTCACCAACAACCTACCTTATAATTTGCCTCAAACTGTTCCATTCCCCACCAGTTCACGGTGGCGAAACTCTGGCGGTGAAACGGACTTGCAGAAACAGAGGTCGGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCAGATAGACCCAGAAGCGGTGAAGCCACCGAAGAGGAGGAACGTCAAGATTTCAACTGACCCACAAAGCGTAGCGGCTCGACATAGAAGAGAGAGAATTAGCGAGAGAATTAGGATACTCCAAAGATTGGTCCCTGGAGGTACCAAAATGGATACCGCTTCTATGTTGGATGAGGCTATACATTACGTAAAATTCTTGAAGACCCAAGTGCAATCCCTCGAAAGAGCCGCCACCAACAGGCCACTCCCTGATGCTGCTGCACCAGCATCTGGCGTAGGGTTTCCTCTGGAAATGTCAAGTGGCAGCTATGTCCCCATGGCCAAACCATCCCAAATGACTCACAACCTTGAGCAGTACGGAGATGCTTAA | 708 | 48.73 | MENDDLKSEDQMEIMMMMQQMEKIPEFYNHLSPPSDHFSSSTTDPHCLETLQQAAESSSPPFTNNLPYNLPQTVPFPTSSRWRNSGGETDLQKQRSVAAMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAPASGVGFPLEMSSGSYVPMAKPSQMTHNLEQYGDA | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1010148 | 1010855 | - | CmaCh09G002350.1 | Cma09g00235 | 300240 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00235 | 235 | Gene3D | - | 133 | 195 | IPR036638 | GO:0046983 | |
Cma09g00235 | 235 | PANTHER | BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN | 1 | 227 | - | - | |
Cma09g00235 | 235 | Pfam | Helix-loop-helix DNA-binding domain | 140 | 179 | IPR011598 | GO:0046983 | |
Cma09g00235 | 235 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 1 | 227 | IPR045843 | GO:0003700|GO:0006355 | |
Cma09g00235 | 235 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 135 | 188 | IPR036638 | GO:0046983 | |
Cma09g00235 | 235 | SMART | finulus | 136 | 185 | IPR011598 | GO:0046983 | |
Cma09g00235 | 235 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 130 | 179 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g00179 | Cma09g00235 | CCT | |
Cma05g00179 | Cma09g00235 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00796 | Cma-Chr7:3617126 | Cma09g00235 | Cma-Chr9:1010148 | 4.86E-40 | dispersed | |
Cma07g01081 | Cma-Chr7:5781528 | Cma09g00235 | Cma-Chr9:1010148 | 1.57E-19 | dispersed | |
Cma08g00752 | Cma-Chr8:4511709 | Cma09g00235 | Cma-Chr9:1010148 | 8.31E-31 | dispersed | |
Cma09g00235 | Cma-Chr9:1010148 | Cma14g01281 | Cma-Chr14:10133846 | 1.43E-34 | dispersed | |
Cma05g00179 | Cma-Chr5:758601 | Cma09g00235 | Cma-Chr9:1010148 | 7.77E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35588 | PF00010 | HLH | 1.50E-06 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00235 | - | - | bhj:120087062 | 307.375 |