Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00242 ATGGCTCTGCCTCAGAATCACTACCAGCAACACTATCAATCCCAACAGCAACACCAATCGATATCTTTTCGCAACTTGTACACCGCCGAGGGTCATGTTTCTCAACCCATCTCCTATTTCAATCCCTTCAATTTGCAGGAGCACTCCCAGCATCCTCCTTATGTTCCTCCATTCGGGTTTGCACCAGGTACAGCCCCTGGCCAGGACGCCAGTGATGGAGTAGCGGATTTTCACTGGATGCATGGCATTGAACCCAAAAAGAAAAGGTTGAAGGAGCAAGATCTTTTCGAGAACAATTCCCAAATATCATCCATTGATTTCTTGCAGCCACGTCCAGTTTCCACAGGACTGGGTTTATCGCTTGACAACACCCGCATGGCTTCTACAGGCGACTCGCCTTTGGTTTCTCTTATAGGTGATGACATTGATCTTGAACTACAGCGACAGGACGAAGATATTGAGAAATTCCTCCATGTTCAGGGCGAAAGGCTACGACGAACCATATTAGAGAAGATCCAAGCAAATCAACTCCAAACTCTCTTGACTGTGGAAGAAAGAATTATTAAGAAACTACGAGAAAAAGAGGCCGAGGTGGAGTGTATTAACAAGAAAAACATCGAACTCGAACAGCGGATGGAGCAGCTGTCAGTGGAAGCTGGTGCTTGGCAGCAGCGAGCTAGGTATAACGAGAACATGATCACAGCTCTCAAGTTCAATCTTCAGCAGGTGTATGCTCAAAGCAGGGATAGCAAGGAAGGATGTGGGGATAGCGAGGTGGAAGACACTGCATCGTGCTGCAATGGTCGGTCGCTTGATTTTCAACTGCTTCGCGGCAATAGCAATGATATGAAGGATTTGATGTACTGCAAAGCTTGCAGGGTTAATGAAGTGTGCATGCTTTTGTTGCCCTGTAAGCATCTCTGCCTTTGCAAGGACTGCGAAAGTAGGCTTAGCTTTTGCCCTCTCTGTCAATCCTCTAAATTCATAGGTATGGAAGTTTATATGTAA 1008 46.23 MALPQNHYQQHYQSQQQHQSISFRNLYTAEGHVSQPISYFNPFNLQEHSQHPPYVPPFGFAPGTAPGQDASDGVADFHWMHGIEPKKKRLKEQDLFENNSQISSIDFLQPRPVSTGLGLSLDNTRMASTGDSPLVSLIGDDIDLELQRQDEDIEKFLHVQGERLRRTILEKIQANQLQTLLTVEERIIKKLREKEAEVECINKKNIELEQRMEQLSVEAGAWQQRARYNENMITALKFNLQQVYAQSRDSKEGCGDSEVEDTASCCNGRSLDFQLLRGNSNDMKDLMYCKACRVNEVCMLLLPCKHLCLCKDCESRLSFCPLCQSSKFIGMEVYM 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1028813 1031136 + CmaCh09G002420.1 Cma09g00242 300247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00242 335 Coils Coil 174 225 - -
Cma09g00242 335 PANTHER F2G19.2 1 335 - -
Cma09g00242 335 Pfam Zinc finger, C3HC4 type (RING finger) 288 325 - -
Cma09g00242 335 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 335 IPR017066 -
Cma09g00242 335 PIRSF SBP1_RNase_bind 10 335 IPR017066 -
Cma09g00242 335 ProSiteProfiles Zinc finger RING-type profile. 289 324 IPR001841 -
Cma09g00242 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 335 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00242 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - csv:101215751 573.163
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01830 Cma09g00242 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00020 Cma-Chr5:96312 Cma09g00242 Cma-Chr9:1028813 1.18E-52 dispersed
Cma09g00242 Cma-Chr9:1028813 Cma12g00018 Cma-Chr12:74795 3.65E-52 dispersed
Cma16g01091 Cma-Chr16:8411350 Cma09g00242 Cma-Chr9:1028813 3.67E-32 dispersed
Cma01g01830 Cma-Chr1:12111405 Cma09g00242 Cma-Chr9:1028813 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g751 Blo01g01524 Blo12g00960 Bda01g00572 . Bpe02g00433 . Bma04g00159 Bma01g02268 . . Cma01g01830 Cma09g00242 Car01g01428 . . Cpe06g00167 . . . . . . . . . . . . . . . Cone4ag1584 Cone7ag1365 Cone17ag0847 Cone20ag0195 Lsi04g01547 Csa04g02422 . . Blo17g00879 . . . . Bpe05g00027 . . Sed01g2676 Cmo01g01889 Cmo09g00236 . . . Car09g00202 . Cpe02g00188 Bhi09g03306 Tan01g4760 Cmetu07g0261 . Hepe01g1776 Mch11g0302 . Cla05g02053 Cam05g2206 Cec05g2222 Cco05g2265 Clacu05g2198 Cmu05g2064 Cre05g2190 . . Chy07g00143 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004711 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00242 Cma_Chr09 FPKM 19.481899 19.113071 27.30435 27.090681 29.495472 26.652508 28.134436 47.108929 52.727303 47.122272