Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00246 | ATGGACGGAGAAGTTTGCTCCGCCGTAGATTCATCACCGACGGCGACAGAGAAGAGGAAGCAAAGGCATCAGAATCAGCTTCAAAAAGAAAGGCCTTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAGCGCTCCAGGATTTGGCTTGGTTCCTACACAACCCCCCTCGCCGCCGCTAGAGCTTACGACACCGCCGTCTTCTACCTACGAGGCCCTACTGCCCGCCTTAACTTCCCCGAATTGATGTTCGAGGAAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGCAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCTATCGAAATCTCCCTCCACGCCTCGAGCTCAAACTCAAACTCCAACTCCAATTCCAGTACTCACACTTCCGAGAAGCCGGATTTAAACGAGTACCCAAGCCCCGAAAGCTCCGACCACGATTAA | 480 | 54.17 | MDGEVCSAVDSSPTATEKRKQRHQNQLQKERPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRGPTARLNFPELMFEEDQLHDMSAASIRKRATEVGARVDAIEISLHASSSNSNSNSNSSTHTSEKPDLNEYPSPESSDHD | 159 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1037948 | 1038427 | - | CmaCh09G002460.1 | Cma09g00246 | 300251 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00246 | 159 | PRINTS | Ethylene responsive element binding protein signature | 33 | 44 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00246 | 159 | PRINTS | Ethylene responsive element binding protein signature | 71 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00246 | 159 | SUPERFAMILY | DNA-binding domain | 33 | 90 | IPR016177 | GO:0003677 | |
Cma09g00246 | 159 | MobiDBLite | consensus disorder prediction | 124 | 159 | - | - | |
Cma09g00246 | 159 | MobiDBLite | consensus disorder prediction | 124 | 149 | - | - | |
Cma09g00246 | 159 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 11 | 157 | - | - | |
Cma09g00246 | 159 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 11 | 157 | - | - | |
Cma09g00246 | 159 | SMART | rav1_2 | 32 | 95 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00246 | 159 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cma09g00246 | 159 | CDD | AP2 | 33 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00246 | 159 | Gene3D | AP2/ERF domain | 32 | 90 | IPR036955 | GO:0003700|GO:0006355 | |
Cma09g00246 | 159 | ProSiteProfiles | AP2/ERF domain profile. | 32 | 89 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00246 | 159 | Pfam | AP2 domain | 33 | 81 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00246 | Cma-Chr9:1037948 | Cma05g00594 | Cma-Chr5:2958701 | 2.70E-24 | dispersed | |
Cma01g01826 | Cma-Chr1:12101981 | Cma09g00246 | Cma-Chr9:1037948 | 2.38E-79 | wgd | |
Cma12g00563 | Cma-Chr12:2940087 | Cma09g00246 | Cma-Chr9:1037948 | 2.84E-19 | wgd | |
Cma03g00965 | Cma-Chr3:6844657 | Cma09g00246 | Cma-Chr9:1037948 | 2.93E-46 | wgd | |
Cma05g00169 | Cma-Chr5:717107 | Cma09g00246 | Cma-Chr9:1037948 | 1.97E-60 | wgd | |
Cma07g00693 | Cma-Chr7:3047127 | Cma09g00246 | Cma-Chr9:1037948 | 6.98E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35591 | PF00847 | AP2 | 1.60E-11 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00246 | K09286 | - | csv:101219005 | 245.743 |