Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00246 ATGGACGGAGAAGTTTGCTCCGCCGTAGATTCATCACCGACGGCGACAGAGAAGAGGAAGCAAAGGCATCAGAATCAGCTTCAAAAAGAAAGGCCTTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAGCGCTCCAGGATTTGGCTTGGTTCCTACACAACCCCCCTCGCCGCCGCTAGAGCTTACGACACCGCCGTCTTCTACCTACGAGGCCCTACTGCCCGCCTTAACTTCCCCGAATTGATGTTCGAGGAAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGCAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCTATCGAAATCTCCCTCCACGCCTCGAGCTCAAACTCAAACTCCAACTCCAATTCCAGTACTCACACTTCCGAGAAGCCGGATTTAAACGAGTACCCAAGCCCCGAAAGCTCCGACCACGATTAA 480 54.17 MDGEVCSAVDSSPTATEKRKQRHQNQLQKERPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPLAAARAYDTAVFYLRGPTARLNFPELMFEEDQLHDMSAASIRKRATEVGARVDAIEISLHASSSNSNSNSNSSTHTSEKPDLNEYPSPESSDHD 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1037948 1038427 - CmaCh09G002460.1 Cma09g00246 300251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00246 159 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Cma09g00246 159 PRINTS Ethylene responsive element binding protein signature 71 91 IPR001471 GO:0003700|GO:0006355
Cma09g00246 159 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Cma09g00246 159 MobiDBLite consensus disorder prediction 124 159 - -
Cma09g00246 159 MobiDBLite consensus disorder prediction 124 149 - -
Cma09g00246 159 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 157 - -
Cma09g00246 159 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 157 - -
Cma09g00246 159 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Cma09g00246 159 MobiDBLite consensus disorder prediction 1 28 - -
Cma09g00246 159 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Cma09g00246 159 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Cma09g00246 159 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Cma09g00246 159 Pfam AP2 domain 33 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00246 Cma-Chr9:1037948 Cma05g00594 Cma-Chr5:2958701 2.70E-24 dispersed
Cma01g01826 Cma-Chr1:12101981 Cma09g00246 Cma-Chr9:1037948 2.38E-79 wgd
Cma12g00563 Cma-Chr12:2940087 Cma09g00246 Cma-Chr9:1037948 2.84E-19 wgd
Cma03g00965 Cma-Chr3:6844657 Cma09g00246 Cma-Chr9:1037948 2.93E-46 wgd
Cma05g00169 Cma-Chr5:717107 Cma09g00246 Cma-Chr9:1037948 1.97E-60 wgd
Cma07g00693 Cma-Chr7:3047127 Cma09g00246 Cma-Chr9:1037948 6.98E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35591 PF00847 AP2 1.60E-11 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00246 K09286 - csv:101219005 245.743