Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00247 ATGAATAGCACAACTTTCGTCTGTAATCCTATGCACGCTCTGCCATTATTACCCTCCTCTCAGTTGCTGTTTCCTAATAACGCCATCAATTTCAGGCATGGGATCTCCATTCCTGTAAAACCCACTTCTCAGGGTTCGTGTAGATGGCGAATCCGAGCCACTGCCGAAAACGGAGCTTCATCGGCGTCGACCTCGCAGATCGACATGGTGAGGAACAGGGAGGGGGTTTTTACCGCCAAACAAAGCAAGGTTGTTGTGCTTTGGGATCTCGATAATAAGCCCCCTCGTGGGCCGCCATACGAGGCGGCTATGGCGCTGAAACGAGTGGCGCAACGCTTCGGCCAAGTGGTCGACATGTCGGCTTACGCCAATCGCCACGCTTTTATCCATTTGCCGCAATGGGTTGTTGAAGAACGCCGCGAGCGCCGGCAATTGGACATTCTTGAGCGCAAAGGGTTGTTCACGCCGTCCGAATCTTACGTCTGCGGGGTCTGCGGTCGCAAGTGCAAAACAAACCTAGACCTCAAGAAGCATTTCAAGCAACTTCATGAACGCGAGCGCCAGAAGAAATTGAACAGAATGAGGTCTCTCAAGGGCAAAAAGCGGCAGCGTTATAAGGAAAAGTTCGTATCTGGGAACCACAAGTACAATGAAGCGGCCAGGTCTCTGATTACTCCGAAAGTTGGGTATGGGCTGGCCTCAGAATTGAGACGTGCTGGGGTTTTTGTGAAGACAGTGGAGGATAAGCCACAGGCGGCTGATTGGGCTTTGAAGAGGCAGATGCAACACTCGATGAGTCGTGGTATTGATTGGATGTTTCTTGTTTCCGATGATTCGGATTTTTCAGAGATGTTAAGGAAGGCTAAGGAGGCTAATTTGGGAACTGTGGTGGTGGGAGATCGTGATAAAGCACTGGGTAGGCACGCAGATTTATGGGTCCCATGGATGGGGGTTGAAAATGGGGATGTTACAGAGGAGGATTTGGTGCCCAAAAGATGGAGGACGAGGAGAACCCAAGAGGATTTGGATGAAGACGATGGTTTTTCAGTTTCTCGTTATTATGGAGAGGCTGAAAGTGGTAGTGATTTGGAGAGTGTAGTGCAAGAGCTTGCTTCCGCCAGTACAGAGTTCAATGGCTTTAGAATTTCTGCTTTCTCAGAGGGGGAAGATGATGATGAATGGGTTGAAGACGATGATGTGGCATCTGACTATCTGCTAGAGATGAGTGACGAGGAAGATGGGTTTTTTCTGATGGACATTTAA 1263 49.41 MNSTTFVCNPMHALPLLPSSQLLFPNNAINFRHGISIPVKPTSQGSCRWRIRATAENGASSASTSQIDMVRNREGVFTAKQSKVVVLWDLDNKPPRGPPYEAAMALKRVAQRFGQVVDMSAYANRHAFIHLPQWVVEERRERRQLDILERKGLFTPSESYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKEKFVSGNHKYNEAARSLITPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWMFLVSDDSDFSEMLRKAKEANLGTVVVGDRDKALGRHADLWVPWMGVENGDVTEEDLVPKRWRTRRTQEDLDEDDGFSVSRYYGEAESGSDLESVVQELASASTEFNGFRISAFSEGEDDDEWVEDDDVASDYLLEMSDEEDGFFLMDI 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1040916 1042178 - CmaCh09G002470.1 Cma09g00247 300252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00247 420 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 188 IPR013087 -
Cma09g00247 420 PANTHER OS06G0166200 PROTEIN 51 389 - -
Cma09g00247 420 Coils Coil 180 200 - -
Cma09g00247 420 PANTHER - 51 389 - -
Cma09g00247 420 ProSitePatterns Zinc finger C2H2 type domain signature. 162 183 IPR013087 -
Cma09g00247 420 CDD PIN_LabA-like 170 300 - -
Cma09g00247 420 Gene3D - 77 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00247 Cma-Chr9:1040916 Cma16g01045 Cma-Chr16:8025295 9.77E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35592 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00247 - - csv:101206044 712.605