Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00254 | ATGCTCCTCCTCGACAATAACATGGCCGTGGAGCTTATGGTGGGGTTTGGGGATGCTACCACCGCTACTAATTTCACGCCCAAGTTGGAAGAAAATGCCGCTGTTTCCGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTCCAGAATTTCCTCCGATTGATGTCCCATACCCCTAATCAACATCACTCCGAACACGATTCTTCCACCTCCACTACTCCCAATGCTGTCGCTCCATACGATGCAGTCGCCGATTCCGTCGTCAACAATTTCAAGAAGGTCATTTCTTTGCTCGATCGGAATAGAACCGGTCACGCCCGCTTCAGAAGGGCGCCGGTTCTTCATACTCCCCCGCCGCCTCCTCCACCCAAGGTCAAGCCGTTGCAGCACCAAGATCCGAGTTCGTCATCAGCCCCTCAGGTTCAAGTAAAGAAACAGGAATCAGTCTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCTCTGTGGTGCGTTTGCCTCCTCTGCCTCACAACAACCCCCATCAGCCTTCTCATCCACCGAATACTTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTAAAAAATGGGTCTGTAGATAGAAAAGATCCGACTACCACCATCAACTTCGTAGCCTCGCCCCCGATTTCCGCTGCAAATTCCTATATTTCATCGCTAACCGGAGACACCGAAAGCTTACAGCCATCTATGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCACTTTCAACTTCCTCGCTAAAGAGAAAATGCAATTCTATGGACGATTCCGCCATGAAGTGTGCCTCATCCTCCGGTCGGTGTCACTGTTCCAAGAAGAGCAGGAAAAACAGGATAAAAAGAGTCATCAGAGTTCCCGCGGTGAGCTCCAAACTTGCGGATATCCCACCGGACGATTACTCCTGGAGAAAGTATGGCCAAAAACCCATTAAAGGCTCTCCCCATCCAAGGGGATATTACAAATGTAGCAGTCTCAGAGGCTGTCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAACGCTTGTTCTGGAATCGTCATAA | 1158 | 50.6 | MLLLDNNMAVELMVGFGDATTATNFTPKLEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNQHHSEHDSSTSTTPNAVAPYDAVADSVVNNFKKVISLLDRNRTGHARFRRAPVLHTPPPPPPPKVKPLQHQDPSSSSAPQVQVKKQESVSAFKVYCPTPSSVVRLPPLPHNNPHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDPTTTINFVASPPISAANSYISSLTGDTESLQPSMSSGFQFTHMSQVSSAGKPPLSTSSLKRKCNSMDDSAMKCASSSGRCHCSKKSRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPATLVLESS | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1067795 | 1069450 | - | CmaCh09G002540.1 | Cma09g00254 | 300259 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00254 | 385 | MobiDBLite | consensus disorder prediction | 109 | 145 | - | - | |
Cma09g00254 | 385 | Pfam | WRKY DNA -binding domain | 314 | 370 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma09g00254 | 385 | PANTHER | WRKY TRANSCRIPTION FACTOR NTEIG-D48 | 30 | 385 | - | - | |
Cma09g00254 | 385 | Gene3D | WRKY domain | 296 | 373 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma09g00254 | 385 | MobiDBLite | consensus disorder prediction | 130 | 145 | - | - | |
Cma09g00254 | 385 | MobiDBLite | consensus disorder prediction | 114 | 129 | - | - | |
Cma09g00254 | 385 | SUPERFAMILY | WRKY DNA-binding domain | 310 | 371 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma09g00254 | 385 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 30 | 385 | IPR044810 | GO:0003700 | |
Cma09g00254 | 385 | SMART | WRKY_cls | 312 | 372 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma09g00254 | 385 | Pfam | Plant zinc cluster domain | 264 | 310 | IPR018872 | - | |
Cma09g00254 | 385 | ProSiteProfiles | WRKY domain profile. | 307 | 373 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01820 | Cma09g00254 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00254 | Cma-Chr9:1067795 | Cma20g00968 | Cma-Chr20:4913335 | 4.81E-16 | dispersed | |
Cma01g01820 | Cma-Chr1:12075582 | Cma09g00254 | Cma-Chr9:1067795 | 0 | wgd | |
Cma03g00963 | Cma-Chr3:6836165 | Cma09g00254 | Cma-Chr9:1067795 | 4.71E-108 | wgd | |
Cma07g00689 | Cma-Chr7:3032530 | Cma09g00254 | Cma-Chr9:1067795 | 4.52E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35593 | PF03106 | WRKY | 3.90E-25 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00254 | - | - | cmo:103493562 | 661.759 |