Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00254 ATGCTCCTCCTCGACAATAACATGGCCGTGGAGCTTATGGTGGGGTTTGGGGATGCTACCACCGCTACTAATTTCACGCCCAAGTTGGAAGAAAATGCCGCTGTTTCCGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTCCAGAATTTCCTCCGATTGATGTCCCATACCCCTAATCAACATCACTCCGAACACGATTCTTCCACCTCCACTACTCCCAATGCTGTCGCTCCATACGATGCAGTCGCCGATTCCGTCGTCAACAATTTCAAGAAGGTCATTTCTTTGCTCGATCGGAATAGAACCGGTCACGCCCGCTTCAGAAGGGCGCCGGTTCTTCATACTCCCCCGCCGCCTCCTCCACCCAAGGTCAAGCCGTTGCAGCACCAAGATCCGAGTTCGTCATCAGCCCCTCAGGTTCAAGTAAAGAAACAGGAATCAGTCTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCTCTGTGGTGCGTTTGCCTCCTCTGCCTCACAACAACCCCCATCAGCCTTCTCATCCACCGAATACTTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTAAAAAATGGGTCTGTAGATAGAAAAGATCCGACTACCACCATCAACTTCGTAGCCTCGCCCCCGATTTCCGCTGCAAATTCCTATATTTCATCGCTAACCGGAGACACCGAAAGCTTACAGCCATCTATGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCACTTTCAACTTCCTCGCTAAAGAGAAAATGCAATTCTATGGACGATTCCGCCATGAAGTGTGCCTCATCCTCCGGTCGGTGTCACTGTTCCAAGAAGAGCAGGAAAAACAGGATAAAAAGAGTCATCAGAGTTCCCGCGGTGAGCTCCAAACTTGCGGATATCCCACCGGACGATTACTCCTGGAGAAAGTATGGCCAAAAACCCATTAAAGGCTCTCCCCATCCAAGGGGATATTACAAATGTAGCAGTCTCAGAGGCTGTCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAACGCTTGTTCTGGAATCGTCATAA 1158 50.6 MLLLDNNMAVELMVGFGDATTATNFTPKLEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNQHHSEHDSSTSTTPNAVAPYDAVADSVVNNFKKVISLLDRNRTGHARFRRAPVLHTPPPPPPPKVKPLQHQDPSSSSAPQVQVKKQESVSAFKVYCPTPSSVVRLPPLPHNNPHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDPTTTINFVASPPISAANSYISSLTGDTESLQPSMSSGFQFTHMSQVSSAGKPPLSTSSLKRKCNSMDDSAMKCASSSGRCHCSKKSRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPATLVLESS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1067795 1069450 - CmaCh09G002540.1 Cma09g00254 300259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00254 385 MobiDBLite consensus disorder prediction 109 145 - -
Cma09g00254 385 Pfam WRKY DNA -binding domain 314 370 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma09g00254 385 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 30 385 - -
Cma09g00254 385 Gene3D WRKY domain 296 373 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma09g00254 385 MobiDBLite consensus disorder prediction 130 145 - -
Cma09g00254 385 MobiDBLite consensus disorder prediction 114 129 - -
Cma09g00254 385 SUPERFAMILY WRKY DNA-binding domain 310 371 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma09g00254 385 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 30 385 IPR044810 GO:0003700
Cma09g00254 385 SMART WRKY_cls 312 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma09g00254 385 Pfam Plant zinc cluster domain 264 310 IPR018872 -
Cma09g00254 385 ProSiteProfiles WRKY domain profile. 307 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01820 Cma09g00254 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00254 Cma-Chr9:1067795 Cma20g00968 Cma-Chr20:4913335 4.81E-16 dispersed
Cma01g01820 Cma-Chr1:12075582 Cma09g00254 Cma-Chr9:1067795 0 wgd
Cma03g00963 Cma-Chr3:6836165 Cma09g00254 Cma-Chr9:1067795 4.71E-108 wgd
Cma07g00689 Cma-Chr7:3032530 Cma09g00254 Cma-Chr9:1067795 4.52E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35593 PF03106 WRKY 3.90E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00254 - - cmo:103493562 661.759