Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00259 ATGGCTGCTTCTTTGCTACTCCGGGGGCATCCTCTCCTGCGGTTTGGGCTCTGGCATCGCGGGCTTTGCTCTGGGGTCGTGCAGGTGACTCGCCGCTCTTGCTGCACTGCGACGGCGGCGTCTACTCCACCGGACGGGAGCTTAACATCTGCTGAAAATACTGCATCAGTGTCGAGTGCCAGTCAATCAACGAAGTACCAAAGATGGTGTGAGCCTGATTATCGAAAGTGGAAAGACCAGGAAGACGAAATTCTCAGCGATGTCGAGCCTGTCATGTCCCTCACTAAAGAGATTCTCCACTCCAATAGGTATGTGGATGGGGAGCGATTGACATCAGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGTTGTGGACTTGAATTCATTATGGTTGATCGACACCCCCAATTTCGGTACTCAAGATGCCTCTTTGTTGTAAGGACTGATGGTGGATGGATCGACTTCTCGTATCAAAAGTGTCTTCGTGCATATATCCGAAGTAAATATCCATCATATGCAGAGATGTTTATTCGAGAACATTTCAAACGTGGTAGTTGA 591 48.56 MAASLLLRGHPLLRFGLWHRGLCSGVVQVTRRSCCTATAASTPPDGSLTSAENTASVSSASQSTKYQRWCEPDYRKWKDQEDEILSDVEPVMSLTKEILHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEFIMVDRHPQFRYSRCLFVVRTDGGWIDFSYQKCLRAYIRSKYPSYAEMFIREHFKRGS 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1085636 1089617 + CmaCh09G002590.1 Cma09g00259 300264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00259 196 Pfam Protein of unknown function (DUF3223) 96 172 - -
Cma09g00259 196 PANTHER - 1 195 IPR044673 -
Cma09g00259 196 PANTHER DCL PROTEIN (DUF3223) 1 195 - -
Cma09g00259 196 MobiDBLite consensus disorder prediction 38 59 - -
Cma09g00259 196 Gene3D - 83 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00259 - - - csv:101218776 325.865
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01814 Cma09g00259 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01837 Cma-Chr1:12146514 Cma09g00259 Cma-Chr9:1085636 2.78E-40 dispersed
Cma09g00229 Cma-Chr9:980474 Cma09g00259 Cma-Chr9:1085636 5.98E-40 dispersed
Cma09g00259 Cma-Chr9:1085636 Cma06g00714 Cma-Chr6:3584345 7.72E-10 dispersed
Cma01g01814 Cma-Chr1:12051206 Cma09g00259 Cma-Chr9:1085636 6.55E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g720 . . . . . . . . . . Cma01g01814 Cma09g00259 Car01g01416 . . Cpe06g00179 . . . . . . . . . . . . . . . Cone4ag1597 . . . Lsi04g01521 Csa04g02444 . . . . . . Bpe02g01790 . Bma01g00665 . Sed01g2690 Cmo01g01870 Cmo09g00252 . . . Car09g00218 . . Bhi09g03277 Tan01g4735 Cmetu07g1444 . Hepe01g1797 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001539 1 2 1 6 4 1 4 2 1 1 1 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 4 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00259 Cma_Chr09 FPKM 7.280125 7.400625 9.237508 11.498363 19.701942 24.282934 19.663731 14.93811 16.809029 14.560813