Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma09g00261 | ATGAGAAACTACAGAATGGCGAAACGGCATTGCTACCCACTTTCAGTTGCGCATTCAATTTCAGGTCACCAAAACGTCTCACTTTTTCTTGATTCCCTCTACTGCTTGGAGGAGGAGGACGGAATTGGGGATGGACATTCCCAGCCAAAGATCGAAGCTTTCTCGATAAATGTTAACGTCGATTCCCCGAATTCTGTGTTCTTGTCGGACAGGGACTTTCTCTGGGAAGACGAGGAATTGGTGTCTCTGTTCTCAAAGGAGAACAGAAATAAGCTCCACGATGCTCTCCCACACAATCCCTCTCTAGCTGCGGCTCGCTCCGACGCGGTTGAGTGGATTCTCAAGGTCAATGCCCATTACTCCTTTACTACCCTCACCGCCGTTTTGGCCGTTGATTATGTCGACAGGTTCCTGTCCAGCCCCCATTTTCAGATCGACAAGCCATGGATGACCCATCTCACCGCCATTGCTTGTTTATCTCTTGCTGCTAAAGTGGAGGAAACCGAAGTTCCCCTGCTTTTAGACCTCCAGGTGGAGGAAAATGGGTACTTCTTCGAAGCTAAAACCATTAAAAGAATGGAGATTCTTGTTCTCTCTACTCTTCTTTGGAGGATGAATCCGGTGAACCCACTTTCATTTTTGGACTATATTGTAAGACGGCTCGGCTTCAAGGACCAGCTCTGTTCTGAATTCCTCTGTAAATGTGAAAGATTACTTCTTTCTGTCATTTTAGATTCCAGATTCGTATGCTTTCTTCCATCACTGATAGCAAGCGCCATTATTTTTCAAGTTATCAACGACAAAGAACCCCATGTCGCAGCAAAATACCAGGATCAGCTTCTGGGTTTTCTTCAAATCGACAAGAATAAGGTGGAAGATTGCTCACAATTCATCATAGAGGCTTCATCGAGAGGACACACAAACAAACAAAGATTTGGTTTAGTGGACATGTCGTGCAGCTCAAATGGTCGGACTCAGAATGTGGACCGTGTAGTGTCGTCGCCGGAGACAGCAACGAAGAAGAGGAAAATTGATGAACAGCCACCGTAG | 1050 | 45.9 | MRNYRMAKRHCYPLSVAHSISGHQNVSLFLDSLYCLEEEDGIGDGHSQPKIEAFSINVNVDSPNSVFLSDRDFLWEDEELVSLFSKENRNKLHDALPHNPSLAAARSDAVEWILKVNAHYSFTTLTAVLAVDYVDRFLSSPHFQIDKPWMTHLTAIACLSLAAKVEETEVPLLLDLQVEENGYFFEAKTIKRMEILVLSTLLWRMNPVNPLSFLDYIVRRLGFKDQLCSEFLCKCERLLLSVILDSRFVCFLPSLIASAIIFQVINDKEPHVAAKYQDQLLGFLQIDKNKVEDCSQFIIEASSRGHTNKQRFGLVDMSCSSNGRTQNVDRVVSSPETATKKRKIDEQPP | 349 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1092895 | 1094520 | + | CmaCh09G002610.1 | Cma09g00261 | 300266 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma09g00261 | 349 | Gene3D | - | 104 | 206 | - | - | |
| Cma09g00261 | 349 | ProSitePatterns | Cyclins signature. | 106 | 137 | IPR006671 | - | |
| Cma09g00261 | 349 | SUPERFAMILY | Cyclin-like | 75 | 206 | IPR036915 | - | |
| Cma09g00261 | 349 | SUPERFAMILY | Cyclin-like | 209 | 309 | IPR036915 | - | |
| Cma09g00261 | 349 | SMART | cyclin_7 | 111 | 199 | IPR013763 | - | |
| Cma09g00261 | 349 | Pfam | Cyclin, N-terminal domain | 97 | 206 | IPR006671 | - | |
| Cma09g00261 | 349 | MobiDBLite | consensus disorder prediction | 335 | 349 | - | - | |
| Cma09g00261 | 349 | SMART | Cyclin_C_2 | 208 | 326 | IPR004367 | - | |
| Cma09g00261 | 349 | CDD | CYCLIN | 106 | 198 | IPR013763 | - | |
| Cma09g00261 | 349 | Pfam | Cyclin, C-terminal domain | 208 | 310 | IPR004367 | - | |
| Cma09g00261 | 349 | Gene3D | - | 207 | 296 | - | - | |
| Cma09g00261 | 349 | PANTHER | CYCLIN D3.1 PROTEIN | 56 | 332 | - | - | |
| Cma09g00261 | 349 | MobiDBLite | consensus disorder prediction | 325 | 349 | - | - | |
| Cma09g00261 | 349 | PANTHER | CYCLINS | 56 | 332 | IPR039361 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma05g00163 | Cma09g00261 | CCT | |
| Cma09g00261 | Cma12g00567 | CCT | |
| Cma09g00261 | Cma12g00567 | ECH | |
| Cma05g00163 | Cma09g00261 | ECH | |
| Cma01g01813 | Cma09g00261 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma09g00261 | Cma-Chr9:1092895 | Cma03g00834 | Cma-Chr3:6287640 | 1.07E-49 | dispersed | |
| Cma01g01813 | Cma-Chr1:12047797 | Cma09g00261 | Cma-Chr9:1092895 | 0 | wgd | |
| Cma11g01728 | Cma-Chr11:11487243 | Cma09g00261 | Cma-Chr9:1092895 | 6.46E-71 | wgd | |
| Cma12g00567 | Cma-Chr12:2965391 | Cma09g00261 | Cma-Chr9:1092895 | 2.24E-102 | wgd | |
| Cma16g00347 | Cma-Chr16:1632612 | Cma09g00261 | Cma-Chr9:1092895 | 7.38E-88 | wgd | |
| Cma19g00585 | Cma-Chr19:6507822 | Cma09g00261 | Cma-Chr9:1092895 | 1.11E-73 | wgd | |
| Cma04g00476 | Cma-Chr4:2429635 | Cma09g00261 | Cma-Chr9:1092895 | 1.25E-89 | wgd | |
| Cma05g00163 | Cma-Chr5:698112 | Cma09g00261 | Cma-Chr9:1092895 | 3.18E-109 | wgd | |
| Cma07g00683 | Cma-Chr7:3002281 | Cma09g00261 | Cma-Chr9:1092895 | 1.72E-78 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma09g00261 | K14505 | - | csv:101218302 | 541.962 |