Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00262 ATGGGAAGCCCTGATAGTCGGGTTGCTTCCGATTCCGCCGACACCACATCCAAGAATGACTCTGAAGACGACGACGACGAAAATGGAGTCCACAGCCCGCCTTCCCATCCCTGTCCTTTCTCCGAAGGAGAGAAGGTCCTCGCTTTTCATAGCTTTCTCATATATGAAGCTAAGGTGCTGAAAACAGAATATCAGTTGAAAGAATGGAGATGTTATGTTCATTACCTTGGATGGAGCAAAACTTGGGATGAGTGGGTAGGACTTGATCGATTACTGAAGTTTACTGAAGAGAATGTGCAGAAACAGCTGGAACTCAATGAGAAGCGAGGGACTGACAAAAAGGCAGCTCGAGCATCCCAGATTAAACCCAAGAATGTGGTAAAAGGGAGGAAGCGAAAGAATGATGCTAGTAAGGAAAAGAATGCCGTGAACGTTGAAAAGCTTGTGAGCATACAGATTCCACTTAAACTAAAGAAGCAACTAGTTGATGACAGTGAGTTTGTAACGCATCTTGGGAAGTTGGTAAAGCTCCCTCGTACGCCTAATGTAGAAGATATCATGAAGAAATATCTTGAATACAGGCTGAAGAAGGATGGAACGAAAGATGAATCCGTTGGAGAAATAGTGAAGGGGCTGATTTGTTACTTTGATAAAGCACTACCCGCGATGCTTCTATACAAAAGCGAGCGCCAACAATATGAAGAGTTGATTGTTCATGATGTCTCCCCATCTTCTATATATGGCGCCGAACACCTTCTACGTCTATTCGTTAGGTTGCCTGAGTTGTTGTCCCAAGCCAATATTGAAGAGGAGACTTTGACGGAACTGCAGCAGAAGTTAGTTGACTTGCTCAAGTTTTTAAGGAAGAATCAGAACACATTTTTCTTGTCATCGTACCATGTGCCTGAGAATATGGAAACAAGCACCAACAATGCCGATGACTAA 945 43.6 MGSPDSRVASDSADTTSKNDSEDDDDENGVHSPPSHPCPFSEGEKVLAFHSFLIYEAKVLKTEYQLKEWRCYVHYLGWSKTWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVVKGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIMKKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIYGAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMETSTNNADD 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1096003 1101691 - CmaCh09G002620.1 Cma09g00262 300267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00262 314 Gene3D - 25 122 - -
Cma09g00262 314 PANTHER PROTEIN MRG1-LIKE ISOFORM X1 1 314 - -
Cma09g00262 314 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 1 314 IPR008676 GO:0005634|GO:0006325|GO:0006355
Cma09g00262 314 CDD CBD_MSL3_like 44 100 - -
Cma09g00262 314 Pfam RNA binding activity-knot of a chromodomain 41 91 IPR025995 -
Cma09g00262 314 MobiDBLite consensus disorder prediction 1 15 - -
Cma09g00262 314 MobiDBLite consensus disorder prediction 106 138 - -
Cma09g00262 314 Coils Coil 259 279 - -
Cma09g00262 314 Gene3D MRG domain 146 313 IPR038217 -
Cma09g00262 314 Pfam MRG 131 299 IPR026541 -
Cma09g00262 314 MobiDBLite consensus disorder prediction 1 39 - -
Cma09g00262 314 PIRSF EAF3_MRG15 34 312 IPR008676 GO:0005634|GO:0006325|GO:0006355
Cma09g00262 314 ProSiteProfiles MRG domain profile. 145 312 IPR026541 -
Cma09g00262 314 SUPERFAMILY Chromo domain-like 30 169 IPR016197 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00262 K11339 MORF4L1, MRG15, EAF3; mortality factor 4-like protein 1 - csv:101219247 570.852
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00952 Cma-Chr3:6794094 Cma09g00262 Cma-Chr9:1096003 4.91E-112 wgd
Cma07g00678 Cma-Chr7:2976341 Cma09g00262 Cma-Chr9:1096003 2.26E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g701 . . . . . . Bma04g00149 . . . . Cma09g00262 . . . Cpe06g00181 . . . . . . . . . . . . . . . Cone4ag1600 Cone7ag1349 . . Lsi04g01515 Csa04g02449 . . . . . . . . . . . . Cmo09g00256 . . . Car09g00220 . . Bhi09g03270 . . . . . . Cla05g02080 Cam05g2231 Cec05g2250 Cco05g2291 Clacu05g2225 Cmu05g2091 Cre05g2216 . . Chy07g00165 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001712 2 6 2 2 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 2 2 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00262 Cma_Chr09 FPKM 30.007301 34.368484 40.252831 32.862972 62.041447 55.923119 60.839779 42.959351 45.978992 45.538246