Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00270 ATGGCGGACAAGGAGAATATATTTCGTCTCACTCGGGCTTCTAAGAAGAGGTTGGCCGAGGCTGCAACCCCCGACGACCGCTCCTCCAACAAGAGGCGGGTCGTTCTTGGAGAGCTTCCTATTTTACAGAATGCTTCTTCTTCCGTCAATCGGAAGTCCAGGTCTAGAGCTAGCAGGCAGAGACGGAGAGTGAAATCAAGGGATATTGCGGGGACAAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGAAATCAATCCACTTCCGCAACGTGATGTCACGTTGTCAGATGAGGGCAATTCGGAAGACCCCCAAATGTGCAGGGGTTACGCCTCTGATATTTATGACTATCTTCGCGCAACGGAGACTGATCCAAGAAGAAGGCCCCTTCCAGATTACATCGGGACGGTACAAAAAGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACACTATACCTCTCTGTTTCATATGTTGACAGATACTTATCTCTAAATGCAATCAGCAGGCAAAAACTTCAGTTGGTGGGAGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATTAGTCCTCCACATGTTGAAGAATTTGTTTATATCACCGACAATACCTACAATAGGGAAGAGGTGGTTGAGATGGAGGCTGATATATTAAAATCACTGGAATTTGAACTTGGAGATCCCACAATAAAGACATTTTTAAGGCAAGTGCAGTGGTCTATCTTTTACTGTTGTAATTGTGAAAAATGTGCAGCACTTGCGTGGTTTGATAACTTATGGAGCATTATTCTAATGTGCAGGAGATTCACAATGGTTGCTCAAGAGACTTATGAGTTTAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTTTTACCGTCTCTCGTTGCTGCATCTGTTATATTTCTAGCACGATTTATGATCCAACCTAAGAAGCATCCTTGGATCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATGAAAGACTGCATTCTACTCGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTGTGTGTCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1239 42.78 MADKENIFRLTRASKKRLAEAATPDDRSSNKRRVVLGELPILQNASSSVNRKSRSRASRQRRRVKSRDIAGTSAAAAAAAAAAEINPLPQRDVTLSDEGNSEDPQMCRGYASDIYDYLRATETDPRRRPLPDYIGTVQKDISANMRGILVDWLVEVAEEYKLVSDTLYLSVSYVDRYLSLNAISRQKLQLVGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEADILKSLEFELGDPTIKTFLRQVQWSIFYCCNCEKCAALAWFDNLWSIILMCRRFTMVAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLVAASVIFLARFMIQPKKHPWISRLEHFTGYKPADMKDCILLVHDLYLSRRGGALAAIREKYKQHKFKFVCVMPSPPEIPIPYFEDVRI 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1114199 1116416 - CmaCh09G002700.1 Cma09g00270 300275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00270 412 PIRSF Cyclin_A_B_D_E 279 403 IPR039361 -
Cma09g00270 412 PIRSF Cyclin_A_B_D_E 3 258 IPR039361 -
Cma09g00270 412 Pfam Cyclin, N-terminal domain 113 241 IPR006671 -
Cma09g00270 412 Gene3D - 113 393 - -
Cma09g00270 412 PANTHER CYCLINS 280 410 IPR039361 -
Cma09g00270 412 SMART Cyclin_C_2 244 399 IPR004367 -
Cma09g00270 412 MobiDBLite consensus disorder prediction 1 33 - -
Cma09g00270 412 Pfam Cyclin, C-terminal domain 283 398 IPR004367 -
Cma09g00270 412 PANTHER CYCLIN-A3-1-RELATED 24 253 - -
Cma09g00270 412 PANTHER CYCLIN-A3-1-RELATED 280 410 - -
Cma09g00270 412 CDD CYCLIN 145 234 IPR013763 -
Cma09g00270 412 SUPERFAMILY Cyclin-like 102 241 IPR036915 -
Cma09g00270 412 SMART cyclin_7 284 368 IPR013763 -
Cma09g00270 412 SMART cyclin_7 151 235 IPR013763 -
Cma09g00270 412 CDD CYCLIN 301 367 IPR013763 -
Cma09g00270 412 ProSitePatterns Cyclins signature. 146 177 IPR006671 -
Cma09g00270 412 Gene3D - 127 242 - -
Cma09g00270 412 PANTHER CYCLINS 24 253 IPR039361 -
Cma09g00270 412 MobiDBLite consensus disorder prediction 1 71 - -
Cma09g00270 412 SUPERFAMILY Cyclin-like 284 401 IPR036915 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00270 Cma12g00577 CCT
Cma05g00158 Cma09g00270 CCT
Cma09g00270 Cma12g00577 ECH
Cma05g00158 Cma09g00270 ECH
Cma01g01803 Cma09g00270 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00270 Cma-Chr9:1114199 Cma15g00658 Cma-Chr15:3138809 2.37E-97 dispersed
Cma01g01803 Cma-Chr1:12023071 Cma09g00270 Cma-Chr9:1114199 0 wgd
Cma11g01716 Cma-Chr11:11366810 Cma09g00270 Cma-Chr9:1114199 9.83E-105 wgd
Cma12g00577 Cma-Chr12:3019501 Cma09g00270 Cma-Chr9:1114199 7.54E-153 wgd
Cma19g00567 Cma-Chr19:6402662 Cma09g00270 Cma-Chr9:1114199 1.16E-95 wgd
Cma05g00158 Cma-Chr5:686175 Cma09g00270 Cma-Chr9:1114199 3.06E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00270 K06627 - csv:101207493 633.639