Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00271 ATGGCGATCACATTCCTATGCCTTCTGATTTTATTCATACTTCACATATTCACAAATCAATTCCTTCACAGAATCCGAAACCTCCCCCCGAGCCCATTTTTTTCACTACCCATCATTGGCCAACTCTACCTCCTCAAACGCCCACTTCACCGGACCCTATTGGACATCTCGCGCCGGCATGGCCCAATCCTCTTCTTCTGGTTCGGTTTCCGACCAGTCCTGGTCGTCTCTTCTCCGTCAGCCGCCGAGGAGTGTCTCTCCAAAAACGACATCGTGTTCGCCAACCGGCCTCATCTCATAGGCGGCAAATACCTCGGGTACAATTACACAAGCCTCCTCTGGGCTCCGTATGGCGAGCACTGGCGAAACCTCCGCCGAATCTCGTCCTTAGAAATCTTCTCCACCCACCGCCTCCAAACGCTTTCCAGTATTCGCGTCGACGAAGTTCGTACGTTGATCCGGAGGCTGTACAACACCAAAAACGACGTCGTAGACATGAAAACAGAGTTTTTCGAGTTGATGTTCAATATCATGATGAGAATGATCGCTGGAAAGCGGTATTATGGGGAAGACGTGGCGGAGTCGGAGGAAGCAGAGAGATTCCGGGAGATTCAGGAGGAGACGTTTCGATTGAGCAGCAAGACTAATTTGGGGGACTTCTTAAGGATGGTGAAATGGGCTGGATTATCGAAAGGGCTTGAAAACAGGATGAAGGAGTTGCAGAGCAAGCGGGATGCTTGGATGCAGAGTTTGATCGAGGAACATCGTAAACAGAGTAAAAAGGATGCTAAAAAGACCATGATTGAGGTCCTCCTCTCGCTGCAACAAAAGGAACCTCACTATTATAAGGACGAGTATATCAGAGGCCTTATGCTCGTGTTGCTATTAGCAGGGACTGAAGGTTCCATCAATACAATGGAGTGGCTGCTGTCACTATTACTCAACAATCCAGAGTGCCTTCAAAGGGCCCAAACGGAAATCGACGATGTTGTAGGAAGATCCAATCGAATCCTGGAGGAATCGGATCTGGCCCATCTTCCTTACCTCCGTAGCCTAATCCACGAGACTCTCCGAATGTACCCACCCGGCCCATTACTCATCCCCCACGAATCATCGGCGGATTGTCACGTTGGAGGGTTTCGTGTCCCAGCTGGTACAACGCTGTTCGTCAACGTGTGGGCCATCCAAAACGACCCCACCGTATGGGTGGACCCCGAAAAATTCAACCCGGGACGATTTGGAAGTGAGGGAGAGGGGTGGTTCTTCAAGTGGATGCCATTTGGAGCCGGGAGGAGGAGATGTCCCGGCGAGGGCCTAGGACTGCGCGTCGTTGGATTGGCTGTCGGGTCGCTGATTCAGTGCTTTGAGTGGGAGTCGGTTGGCGGGGAATGTATTGATATGAGGGAAGGCGTTGGACTGACGCTGCCCAAAGCCGTGCCCCTCCACGCCCTTTGCCGACCCCGTTCAAAGGTCGCACATTTGCTTCCCCAAATCTGA 1497 51.84 MAITFLCLLILFILHIFTNQFLHRIRNLPPSPFFSLPIIGQLYLLKRPLHRTLLDISRRHGPILFFWFGFRPVLVVSSPSAAEECLSKNDIVFANRPHLIGGKYLGYNYTSLLWAPYGEHWRNLRRISSLEIFSTHRLQTLSSIRVDEVRTLIRRLYNTKNDVVDMKTEFFELMFNIMMRMIAGKRYYGEDVAESEEAERFREIQEETFRLSSKTNLGDFLRMVKWAGLSKGLENRMKELQSKRDAWMQSLIEEHRKQSKKDAKKTMIEVLLSLQQKEPHYYKDEYIRGLMLVLLLAGTEGSINTMEWLLSLLLNNPECLQRAQTEIDDVVGRSNRILEESDLAHLPYLRSLIHETLRMYPPGPLLIPHESSADCHVGGFRVPAGTTLFVNVWAIQNDPTVWVDPEKFNPGRFGSEGEGWFFKWMPFGAGRRRCPGEGLGLRVVGLAVGSLIQCFEWESVGGECIDMREGVGLTLPKAVPLHALCRPRSKVAHLLPQI 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1122974 1124951 + CmaCh09G002710.1 Cma09g00271 300276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00271 498 Coils Coil 230 250 - -
Cma09g00271 498 SUPERFAMILY Cytochrome P450 29 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 Gene3D Cytochrome P450 23 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 PANTHER CYTOCHROME P450 81E8 12 495 - -
Cma09g00271 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 427 436 IPR017972 GO:0005506|GO:0016705
Cma09g00271 498 PANTHER CYTOCHROME P450 82C3-RELATED 12 495 - -
Cma09g00271 498 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 PRINTS E-class P450 group I signature 173 191 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 PRINTS E-class P450 group I signature 306 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 PRINTS E-class P450 group I signature 350 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 PRINTS E-class P450 group I signature 391 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 PRINTS E-class P450 group I signature 424 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 PRINTS E-class P450 group I signature 434 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 PRINTS P450 superfamily signature 425 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 PRINTS P450 superfamily signature 434 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00271 498 Pfam Cytochrome P450 30 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00271 - - - csv:101207735 835.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01801 Cma-Chr1:12016730 Cma09g00271 Cma-Chr9:1122974 0 dispersed
Cma09g00271 Cma-Chr9:1122974 Cma17g01387 Cma-Chr17:9243802 5.76E-170 dispersed
Cma09g00267 Cma-Chr9:1109388 Cma09g00271 Cma-Chr9:1122974 1.50E-169 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g686 . . . . . . . Bma01g02256 . . . Cma09g00271 . . . Cpe06g00187 . Bhi04g00395 . . . . . Lcy13g2119 . . . . . . . . . . . . Csa04g02459 . . . . . . . . . . . . Cmo09g00267 . . . . . . Bhi09g03252 . . . . Mch11g0343 . . . . . . . . . . Chy07g00173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000014 8 19 13 8 6 18 15 17 16 19 16 18 14 17 19 19 18 9 12 19 19 25 15 12 12 20 11 24 18 21 477
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00271 Cma_Chr09 FPKM 4.535525 5.827214 49.275013 48.011284 1.33315 1.327286 1.284153 7.470751 7.38752 7.321061