Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00272 ATGCCGGTCGGATTGCCGTTGACCGTTGCCACGTCGTCCTACATTTTCATTATGTCGTTATCGTGGCTTCATCGGATTGGCCAATCGGTTAGCGACGAAAATAAGAAAAACTGCAATGACTTTGGTTTCAGTCTCAATATTTTGGGGGCGCAGAGGGCTATTTACCGGGTCCTCTCCGCGCCAATTACCGTCGTTCCTCTTCCGTCTGCACCATCGCGTACGGTCCACCAGCACACCATGTCTCCGCCCTCCACCAGTTTACATTCTGCCATCTTCGTCTATTGTTTAGTTGGTTTCAATTTTCTGGGCGCGATTTTTTCCTCATCTGTGGACTCTAGAGACTTCGATTATCAGCAGCGCCCTGTGATTCTTCCTCTCTATATTTCACCGACGAATTCCACCCATCAGCGCGTTTTGGACCGTGATCATCGTCTCCGGCACCTGTTGAACTTGGAAAAACCCCACTCGTCAAATGCTCGAATGAGACTCTACGACGACCTCCTTACCAACGGGTATTACACGACGCGTCTATGGATTGGGACTCCTCCACAAGAATTTGCTCTTATTGTGGACACCGGAAGTACTGTGACATACGTTCCATGCTCTAACTGCGTAGATTGCGGGAACCATCAGGATCCAAGGTTCCAACCGAAGTTGTCTAGCTCATATCAACCTGTTAAGTGCAATATCGATTGTAGCTGTGATGACAATGGAGTCCAGTGTACATACGAGAGACGGTATGCAGAGATGAGTACTAGCAGCGGTGTCCTTGCTGAGGACATCATGTCATTTGGAAAAGAAAGTGAACTTCTACCCCAGCGTGCAGTCTTTGGCTGTGAAACTATGGAAACTGGCGATCTTTATACCCAGCGTGCTGATGGGATTATGGGTTTGGGCCGTGGTACACTCAGTGTGATGGACCAACTTGTTGGCAAGGGTGCTGTGAGTAATTCATTTTCATTATGTTATGGTGGGATGGATGTTGGTGGGGGTGCAATGGTTCTTGGTGGGATCTCTTCACCCCCTGGTATGGTATTTACCCACTCGGACACATCTCGAAGCCCATATTATAATATAGAGTTGAAGGAAATACATGTTGCTGGGAAGCCATTGAAGTTGAATCCGAAGACTTTCGATGGGAAGTATGGATCTGTCTTGGATAGTGGAACTACATATGCTTATTTTCCAGAAAAAGCCTACTATGCATTTAAGGACGCTCTAATGAAGAAAATTAGTTTCCTGAAACAAATCAATGGTCCTGACCCAAATTTTAAAGATATTTGTTTTTCTGGTGCTGGGAGGGATGTGTCTGAACTTTCAAAAGTCTTTCCAGAGGTTGCTATGGTATTTGCCAATGGACAGAAAATTTCACTCTCTCCGGAGAACTACTTGTTCCGGCATACGAAGGTTAGTGGTGCATATTGTCTAGGAATCTTTAAAAATGGTAATGATCAGACAACACTTTTGGGAGGAATTATTGTTCGTAATACCCTTGTCACCTATGATCGAGAGAACACCAAAATTGGGTTTTGGAAGACTAACTGTTCTGAACTTTGGAAGAATCTGCATTATCTTTCTCCTGCTCCTCCTCCAGCTCCTCTACCTTCCTATGGTCAGAATACAAGTAATGAAATTCCTCCACCTGTTTCTCCAACTGTGCCATTTCTTTCCGGTGAATTTCAGGTTGGAGTCATAACATTTAATATGGTGCTTCATGCCAACAAATCCTCCGTGAAGCTTAACATCACTGAGCTTGCAGAATTTATTGCCAATGAGCTTGAAGTTAATGTCTCACAGGTTCACATGCTGAACTTTACATCGGGGGGAACTGATTTCTTCATTAGATGGGCCATCTTCCCTGCTGATTCTGCTGGTTATATATCTAATTCCACGGCAATGGACATAATTTCTCGCCTGAAGAAACATGACTTGCAACTTCCTGAAAAATTCGGAAGCTATCAGCTGGTTGAATTGAATGTTGAACCTCCATTAAAGAAGACATGGATGGAGCTGCACTTCTGGTCTATGATGTCTATTGTAGCAGCAGTTACCTTAGTTGTTGGATTGGCAGCCGGAAGCACGTGGCTGATTTGGAGATACAGACGGAGGGAGCTGAGTTCATATGAGCCTGTTGGTGCTGTCGGACCCGAGCAAGAGCTTCAGCCACTATAG 2172 45.07 MPVGLPLTVATSSYIFIMSLSWLHRIGQSVSDENKKNCNDFGFSLNILGAQRAIYRVLSAPITVVPLPSAPSRTVHQHTMSPPSTSLHSAIFVYCLVGFNFLGAIFSSSVDSRDFDYQQRPVILPLYISPTNSTHQRVLDRDHRLRHLLNLEKPHSSNARMRLYDDLLTNGYYTTRLWIGTPPQEFALIVDTGSTVTYVPCSNCVDCGNHQDPRFQPKLSSSYQPVKCNIDCSCDDNGVQCTYERRYAEMSTSSGVLAEDIMSFGKESELLPQRAVFGCETMETGDLYTQRADGIMGLGRGTLSVMDQLVGKGAVSNSFSLCYGGMDVGGGAMVLGGISSPPGMVFTHSDTSRSPYYNIELKEIHVAGKPLKLNPKTFDGKYGSVLDSGTTYAYFPEKAYYAFKDALMKKISFLKQINGPDPNFKDICFSGAGRDVSELSKVFPEVAMVFANGQKISLSPENYLFRHTKVSGAYCLGIFKNGNDQTTLLGGIIVRNTLVTYDRENTKIGFWKTNCSELWKNLHYLSPAPPPAPLPSYGQNTSNEIPPPVSPTVPFLSGEFQVGVITFNMVLHANKSSVKLNITELAEFIANELEVNVSQVHMLNFTSGGTDFFIRWAIFPADSAGYISNSTAMDIISRLKKHDLQLPEKFGSYQLVELNVEPPLKKTWMELHFWSMMSIVAAVTLVVGLAAGSTWLIWRYRRRELSSYEPVGAVGPEQELQPL 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1125520 1131095 + CmaCh09G002720.1 Cma09g00272 300277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00272 723 Pfam Xylanase inhibitor N-terminal 173 337 IPR032861 -
Cma09g00272 723 SUPERFAMILY Acid proteases 169 520 IPR021109 -
Cma09g00272 723 PRINTS Pepsin (A1) aspartic protease family signature 179 199 IPR001461 GO:0004190|GO:0006508
Cma09g00272 723 PRINTS Pepsin (A1) aspartic protease family signature 384 395 IPR001461 GO:0004190|GO:0006508
Cma09g00272 723 PRINTS Pepsin (A1) aspartic protease family signature 487 502 IPR001461 GO:0004190|GO:0006508
Cma09g00272 723 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 109 560 - -
Cma09g00272 723 Gene3D Acid Proteases 344 520 IPR021109 -
Cma09g00272 723 CDD pepsin_A_like_plant 172 515 IPR034161 -
Cma09g00272 723 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 188 199 IPR001969 GO:0004190|GO:0006508
Cma09g00272 723 PANTHER ASPARTYL PROTEASES 109 560 IPR001461 GO:0004190|GO:0006508
Cma09g00272 723 Pfam Xylanase inhibitor C-terminal 357 510 IPR032799 -
Cma09g00272 723 Gene3D Acid Proteases 150 336 IPR021109 -
Cma09g00272 723 ProSiteProfiles Peptidase family A1 domain profile. 173 511 IPR033121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00272 - - - cmos:111442809 1378.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00506 Cma-Chr2:2710947 Cma09g00272 Cma-Chr9:1125520 0 dispersed
Cma09g00272 Cma-Chr9:1125520 Cma20g00981 Cma-Chr20:5217563 0 dispersed
Cma01g01800 Cma-Chr1:12010526 Cma09g00272 Cma-Chr9:1125520 8.67E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g682 . Blo12g00980 . Bda03g00191 . Bpe04g00164 . . . . . Cma09g00272 . . . . . . . . . . . . . . . . . . . . . Cone17ag0871 Cone20ag0219 . Csa04g02461 . . . . . . . . . . . . Cmo09g00268 . . . Car09g00227 . . Bhi09g03250 . . . Hepe01g1811 Mch11g0344 . Cla05g02090 . . . . . . . . Chy07g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002183 1 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 3 2 2 2 2 1 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00272 Cma_Chr09 FPKM 22.361418 23.201832 20.728983 20.027815 17.831898 16.157 18.393127 18.162664 17.551987 18.284721