Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00277 ATGGGCGGAGGCAATGGCCAGAAGTCTAAAATGGCTCGGGAGAAAAACCTGGAGAAACAAAAGTCCTCCTCAAGAGGAAGTCAGCTGGAAAAGAACAAGAAAGCCATGACAATACAGTGTAAGGTATGCATGCAGACATTTATATGCACAACGACGGAGGTGAAGTGCAGGGAGCATGCAGAAGCAAGGCACCCAAAATCCGGTGTTTATGCCTGTTTTCCCCATCTTAAGAATCCCAACTCCTCCTAG 249 47.39 MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAEARHPKSGVYACFPHLKNPNSS 82
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1140286 1141050 + CmaCh09G002770.1 Cma09g00277 300282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00277 82 Gene3D - 1 78 IPR026939 -
Cma09g00277 82 PANTHER OS07G0114300 PROTEIN 1 77 IPR039713 -
Cma09g00277 82 PANTHER - 1 77 - -
Cma09g00277 82 MobiDBLite consensus disorder prediction 1 33 - -
Cma09g00277 82 SUPERFAMILY Expressed protein At2g23090/F21P24.15 1 77 - -
Cma09g00277 82 Pfam Zinc-binding 39 76 IPR039438 -
Cma09g00277 82 MobiDBLite consensus disorder prediction 11 28 - -
Cma09g00277 82 Pfam 4F5 protein related disordered region 3 36 IPR007513 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00277 - - - rcn:112187142 149.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00329 Cma-Chr16:1546250 Cma09g00277 Cma-Chr9:1140286 1.79E-40 wgd
Cma04g00460 Cma-Chr4:2339696 Cma09g00277 Cma-Chr9:1140286 6.94E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g669 . . . . . . . . . . . Cma09g00277 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g02464 . . Blo17g00866 Blo18g00715 . Bda01g01593 Bpe02g01780 Bpe05g00039 Bma01g00674 Bma05g00051 Sed13g1796 . Cmo09g00272 . . . Car09g00233 . . Bhi09g03246 Tan01g4713 Cmetu07g1941 . . Mch11g0349 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001418 2 3 2 2 2 2 1 3 2 1 2 2 2 3 3 4 2 2 2 1 3 2 2 1 3 2 3 3 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00277 Cma_Chr09 FPKM 98.983154 100.210136 37.922256 30.118782 23.925121 21.1763 25.392628 0.0 0.245789 0.378578